kermt-infer SKILL.md skillA
kermt-infer from nvidia-bionemo/bionemo-agent-toolkit is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add nvidia-bionemo/bionemo-agent-toolkit/kermt-infer@git:20260825.0e67a61Pins git:20260825.0e67a61 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- nvidia-bionemo/bionemo-agent-toolkit
- Path
skills/bionemo-agent-toolkit/skills/kermt-infer/SKILL.md- Versions recorded
- 1
- Latest version
- git:20260825.0e67a61, committed Aug 25, 2026
- Size
- 5,692 bytes
- Repository stars
- 503
- License
- a license file GitHub does not identify
Run predictions with a finetuned KERMT checkpoint on a SMILES-only CSV. The skill validates that the input ckpt has task FFN heads (refuses pretrain ckpts with a redirect to kermt-finetune), validates the CSV, prepares the data (clean + rdkit_2d features), then launches main.py predict inside the kermt container (blocking, minutes-scale).
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# kermt-infer Run predictions with a finetuned KERMT checkpoint on a SMILES-only CSV. The skill is the workflow orchestrator: validate ckpt, validate CSV, prepare data, launch the runner blocking, return the predictions CSV. ## Hardware requirements - **GPUs**: 1 (single-GPU). Multi-GPU inference is not currently supported. - **VRAM**: ≥ 4 GB for the default `batch_size 32`. - **Disk**: a few hundred MB per run (cleaned CSV + features + predictions). - **Driver / CUDA**: any host supporting CUDA 12.6 (the kermt image base). ## Inputs Required: - `--ckpt <path>` — finetuned checkpoint (must have task FFN heads). The validator refuses pretrain ckpts with a redirect to `kermt-finetune`. - `--csv <path>` — SMILES-only CSV. First column is `smiles`; other columns are ignored. Optional: - `--batch-size N` — override the configured default (32). - `--seed N` — random seed for inference (deterministic featurization paths). - `--gpus 0` — single GPU id (default 0). Multi-GPU rejected. - `--from-prepare <dir>` — skip the prepare step and reuse an existing `prepare_data.json` in `<dir>`. ## Workflow Let `$KERMT_REPO` be the path to your kermt repo checkout, and assume …
Read the whole file at its exact version.
How to install
mdr add nvidia-bionemo/bionemo-agent-toolkit/kermt-infer@sha256:bc74060116d9061eThe line at the top of this page pins the label git:20260825.0e67a61, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_tonda47gbf4rmx6e)
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Versions
The registry has recorded 1 version of this file, committed on Aug 25, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (5692 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
nvidia-bionemo/bionemo-agent-toolkit · 503 stars · license a license file GitHub does not identify · pushed 2026-11-05 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_tonda47gbf4rmx6e GET https://markdownregistry.com/api/v1/resolve?ref=nvidia-bionemo/bionemo-agent-toolkit/kermt-infer GET https://markdownregistry.com/api/v1/blob/bc74060116d9061ef2357adfa26d85615c9e2dcf0d17c3e60fb5af998bb3a5f3
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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