xuzhougeng/wisp-science · skills/public-data-access/SKILL.md

public-data-access skillA

public-data-access is agent-read markdown (skill) from xuzhougeng/wisp-science: Plan, validate, and document public-bioinformatics data acquisition for GEO/GSE/GSM/GPL/GDS, SRA/ENA, TCGA/GDC, GTEx, and DepMap. Covers expression matrices, raw reads, download manifests, caches, and optional geokit SOFT/Series Matrix acquisition for R workflows..

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add xuzhougeng/wisp-science/public-data-access@git:20260908.42a154e
Exact content
mdr add xuzhougeng/wisp-science/public-data-access@sha256:72bb6c56aaab71ae

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_utjsd5vibtww33ui.svg)](https://markdownregistry.com/a/art_utjsd5vibtww33ui)

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Versions

versioncommittedcommitsizeaudit
git:20260908.42a154e latest2026-09-08 42a154e 6,916 BA view · diff
git:20260816.f4f071d2026-08-16 f4f071d 5,898 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (6916 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

xuzhougeng/wisp-science · 1,115 stars · license AGPL-3.0 · pushed 2026-09-08 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_utjsd5vibtww33ui
GET https://markdownregistry.com/api/v1/resolve?ref=xuzhougeng/wisp-science/public-data-access
GET https://markdownregistry.com/api/v1/blob/72bb6c56aaab71ae8fa31d1707360becc9f75cc88b4ca8418e6baeefdac88b83