parabricks SKILL.md skillA
This file is byte-identical to the first copy the registry indexed, one of 3 indexed copies. Same content hash, so the same checks give both the same grade.
parabricks from nvidia-bionemo/bionemo-agent-toolkit is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add nvidia-bionemo/bionemo-agent-toolkit/parabricks@v1.4.0Pins v1.4.0 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- nvidia-bionemo/bionemo-agent-toolkit
- Path
skills/bionemo-agent-toolkit/skills/parabricks/SKILL.md- Versions recorded
- 7
- Latest version
- v1.4.0, committed Oct 27, 2026
- First version recorded
- Oct 12, 2026
- Size
- 11,331 bytes
- Repository stars
- 503
- License
- a license file GitHub does not identify
Plan NVIDIA Parabricks pbrun commands, translate CPU options and check runtime readiness. Use for individual tools, including planning-only questions.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Parabricks ## Purpose Use this skill to discover the right NVIDIA Parabricks `pbrun` command, assess runtime readiness, and generate version-aware command guidance for individual tools. Do **not** use this skill for whole-workflow inspection, acceleration planning, or wiring optional GPU branches. For pipeline-level work, use `genomics-workflow-acceleration`. ## When to Use This Skill - Which `pbrun` tool fits the user's data and goal - GPU, driver, Docker, container, storage, or installation readiness - Command shape, flags, and validation for a specific Parabricks tool - Reference/index compatibility and CPU-to-Parabricks option translation - Troubleshooting a single Parabricks command or tool family - Planning-only or "do not run" questions about a named `pbrun` tool (for example reference/index compatibility, output naming, or flag validity). Use this skill's references to answer; do not skip it because nothing will be executed. ## Prerequisites - **Command guidance:** No Parabricks/NGC credential or local GPU/container runtime is required to read references or generate commands. - **Readiness helper:** Requires Bash and GNU coreutils `timeout` (or `gtimeout`) …
Read the whole file at its exact version.
How to install
mdr add nvidia-bionemo/bionemo-agent-toolkit/parabricks@sha256:e334834c39374261The line at the top of this page pins the label v1.4.0, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_yftviagi5p3ojlna)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 7 versions of this file, between Oct 12, 2026 and Oct 27, 2026, about one every 2 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| v1.4.0 latest | 2026-10-27 | b9ef98a | 11,331 B | A | view · diff |
| v1.4.0 | 2026-10-26 | e34d999 | 11,289 B | A | view · diff |
| v1.3.0 | 2026-10-13 | d70b327 | 11,140 B | A | view · diff |
| v1.3.0 | 2026-10-13 | 613948e | 10,673 B | A | view · diff |
| v1.3.0 | 2026-10-13 | 164315c | 10,448 B | A | view · diff |
| v1.2.4 | 2026-10-12 | a8be2ea | 14,974 B | A | view · diff |
| v1.2.4 | 2026-10-12 | 9aefbf0 | 14,955 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (11331 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
nvidia-bionemo/bionemo-agent-toolkit · 503 stars · license a license file GitHub does not identify · pushed 2026-11-05 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_yftviagi5p3ojlna GET https://markdownregistry.com/api/v1/resolve?ref=nvidia-bionemo/bionemo-agent-toolkit/parabricks GET https://markdownregistry.com/api/v1/blob/e334834c3937426190333b0564e0215183a8eac47287df4721cfb86e06ca807f
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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