protocolsio-integration SKILL.md skillA
protocolsio-integration from jaechang-hits/sciagent-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add jaechang-hits/sciagent-skills/protocolsio-integration@git:20260528.7303680Pins git:20260528.7303680 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- jaechang-hits/sciagent-skills
- Path
skills/lab-automation/protocolsio-integration/SKILL.md- Versions recorded
- 3
- Latest version
- git:20260528.7303680, committed May 28, 2026
- First version recorded
- Feb 18, 2026
- Size
- 17,216 bytes
- Repository stars
- 381
- License
- a license file GitHub does not identify
protocols.io REST API: search and fetch wet-lab, bioinformatics, and clinical protocols by keyword, DOI, or category, with steps, reagents, materials, equipment, timing. Public access free; auth needed for private or publishing. Pair with opentrons-protocol-api or benchling-integration to execute.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# protocols.io Integration ## Overview protocols.io is the leading protocol repository for life sciences with 90,000+ open-access experimental protocols covering molecular biology, cell biology, bioinformatics, clinical research, and lab automation. The REST API provides programmatic access to protocol search, full protocol retrieval (steps, reagents, materials, equipment), protocol versioning, workspace management, and protocol publishing. Public protocols are freely accessible; authentication (OAuth2 token) is required for private protocols or creating/editing. ## When to Use - Searching for validated wet-lab protocols by keyword, technique, or journal article DOI - Retrieving the full step-by-step content of a protocol (reagents, timing, volumes, notes) for automation or analysis - Finding protocols associated with a specific reagent, kit, or instrument - Building lab automation workflows by extracting protocol steps and reagent lists programmatically - Verifying protocol versions and citing the correct DOI for methods sections - Discovering community-validated protocols as alternatives to proprietary methods …
Read the whole file at its exact version.
How to install
mdr add jaechang-hits/sciagent-skills/protocolsio-integration@sha256:e1d415b485a2fe5eThe line at the top of this page pins the label git:20260528.7303680, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_3dehjfi5uob3msd4)
2 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 3 versions of this file, between Feb 18, 2026 and May 28, 2026, about one every 49 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260528.7303680 latest | 2026-05-28 | 7303680 | 17,216 B | A | view · diff |
| git:20260428.81ea2d2 | 2026-04-28 | 81ea2d2 | 17,213 B | A | view · diff |
| git:20260218.8df1694 | 2026-02-18 | 8df1694 | 17,356 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (17216 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
jaechang-hits/sciagent-skills · 381 stars · license a license file GitHub does not identify · pushed 2026-10-16 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_3dehjfi5uob3msd4 GET https://markdownregistry.com/api/v1/resolve?ref=jaechang-hits/sciagent-skills/protocolsio-integration GET https://markdownregistry.com/api/v1/blob/e1d415b485a2fe5e5140e13c872bc3e9405a0285ba51ceb91c2e67be12192d2e
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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