omics-plotting SKILL.md skillA
omics-plotting from jaechang-hits/sciagent-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add jaechang-hits/sciagent-skills/omics-plotting@git:20260827.82bef43Pins git:20260827.82bef43 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- jaechang-hits/sciagent-skills
- Path
skills/data-visualization/omics-plotting/SKILL.md- Versions recorded
- 3
- Latest version
- git:20260827.82bef43, committed Aug 27, 2026
- First version recorded
- Aug 18, 2026
- Size
- 25,192 bytes
- Repository stars
- 381
- License
- a license file GitHub does not identify
omics-plotting: publication-style figure authoring for omics / bioinformatics results with matplotlib / seaborn. Read this before writing any plotting or figure code in any omics analysis — RNA-seq, proteomics, single-cell, variant, or database results — not only when a plot is explicitly requested: whenever an analysis will produce a figure, load this first and follow its recipes. Covers volcano, MA, expression / correlation heatmap, GSEA bar / dot plot, box / violin / bar / ridgeline, PCA /…
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# omics-plotting ## Overview When the user wants a figure, **generate it with matplotlib / seaborn**, applying the shared style block below. The user can hand-tune colors, fonts, or spines per plot, but unless they ask for something specific, paste the style block and reuse the palette so a whole analysis reads as one figure system at a glance. This skill is self-contained: everything you need (style, palette, recipes) is in this document. ## When to use - The user asks for a plot / figure / chart / visualization from a results table or an in-memory DataFrame (DEG table, enrichment result, expression matrix, long-form measurements, survival table…). - You are preparing figures for a report, a paper submission or presentation and want a consistent publication style. > Combining several plots into one multi-panel composite, or assembling > user-supplied PNG/PDF panels, is handled by the sibling `multipanel` > skill — use this skill to draw each individual panel. ## Do NOT use for - Interactive dashboards or web charts (this is static matplotlib output). - 3D molecular structure rendering (that is the structure viewer, not a plot). ## Key Concepts …
Read the whole file at its exact version.
How to install
mdr add jaechang-hits/sciagent-skills/omics-plotting@sha256:46cc3b8fce69b7e0The line at the top of this page pins the label git:20260827.82bef43, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_bnychr5poa2cefci)
4 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 3 versions of this file, between Aug 18, 2026 and Aug 27, 2026, about one every 5 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260827.82bef43 latest | 2026-08-27 | 82bef43 | 25,192 B | A | view · diff |
| git:20260827.cbbeb75 | 2026-08-27 | cbbeb75 | 25,012 B | A | view · diff |
| git:20260818.48f77f2 | 2026-08-18 | 48f77f2 | 19,392 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (25192 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
jaechang-hits/sciagent-skills · 381 stars · license a license file GitHub does not identify · pushed 2026-10-16 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_bnychr5poa2cefci GET https://markdownregistry.com/api/v1/resolve?ref=jaechang-hits/sciagent-skills/omics-plotting GET https://markdownregistry.com/api/v1/blob/46cc3b8fce69b7e00f79166a8f3f874eee85e14f5ee96d93d65beebeb38d40c2
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.