pride-database SKILL.md skillA
pride-database from jaechang-hits/sciagent-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add jaechang-hits/sciagent-skills/pride-database@git:20260522.d4a4f76Pins git:20260522.d4a4f76 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- jaechang-hits/sciagent-skills
- Path
skills/proteomics-protein-engineering/pride-database/SKILL.md- Versions recorded
- 3
- Latest version
- git:20260522.d4a4f76, committed May 22, 2026
- First version recorded
- Feb 18, 2026
- Size
- 32,728 bytes
- Repository stars
- 381
- License
- a license file GitHub does not identify
Search the PRIDE Archive v3 REST API for proteomics datasets: discover projects by keyword + faceted filters (organism, instrument, disease, software), fetch project metadata, list and download RAW/PEAK/RESULT/FASTA files (with FTP/Aspera URLs), look up which projects mention a UniProt accession, and find similar projects. PRIDE v3 no longer exposes peptide/PSM-level identification endpoints — for spectrum-level data download the project's RESULT files. Use uniprot-protein-database for protein…
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# PRIDE Database ## Overview The PRIDE Archive (ProteomicsIDEntifications database) at EMBL-EBI is the world's largest public mass-spectrometry proteomics repository — 39,000+ projects and 3.4M+ deposited files as of 2026. Programmatic access is via a JSON REST API at `https://www.ebi.ac.uk/pride/ws/archive/v3/`. No authentication is required. The OpenAPI/Swagger spec is at `https://www.ebi.ac.uk/pride/ws/archive/v3/v3/api-docs`. PRIDE v3 returns **plain JSON arrays** for list endpoints (no HAL+JSON `_embedded` envelope) and intentionally does not expose per-peptide or per-PSM identification endpoints — for spectrum-level identifications, download the project's `RESULT` files (mzIdentML, MaxQuant txt, etc.) and parse them locally. ## When to Use - Finding published proteomics datasets by free-text keyword and facet filters (organism, tissue, disease, instrument, software, PTM) for meta-analysis or benchmarking - Downloading raw mass-spectrometry data (RAW, mzML, MGF) or pre-processed identifications (RESULT files) from a specific PRIDE project accession …
Read the whole file at its exact version.
How to install
mdr add jaechang-hits/sciagent-skills/pride-database@sha256:11397f1dd234a497The line at the top of this page pins the label git:20260522.d4a4f76, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_g4eo2nrihy35tu65)
2 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 3 versions of this file, between Feb 18, 2026 and May 22, 2026, about one every 46 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260522.d4a4f76 latest | 2026-05-22 | d4a4f76 | 32,728 B | A | view · diff |
| git:20260428.81ea2d2 | 2026-04-28 | 81ea2d2 | 33,881 B | A | view · diff |
| git:20260218.8df1694 | 2026-02-18 | 8df1694 | 34,005 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (32728 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
jaechang-hits/sciagent-skills · 381 stars · license a license file GitHub does not identify · pushed 2026-10-16 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_g4eo2nrihy35tu65 GET https://markdownregistry.com/api/v1/resolve?ref=jaechang-hits/sciagent-skills/pride-database GET https://markdownregistry.com/api/v1/blob/11397f1dd234a497fbfda974243a12e416c813aebdbdc49be3b079f978d57da7
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.