scientific-writing skillA
scientific-writing is agent-read markdown (skill) from ammawla/encode-toolkit: Generate publication-ready methods sections, figure legends, supplementary tables, and data availability statements from ENCODE analysis provenance. Implements the scientific documentation standards requiring complete metadata reporting. Use when the user needs to write methods, generate figure legends, create supplementary tables, draft data availability statements, compile tool citations, or auto-generate any publication text from their ENCODE analysis. Trigger on: methods section, figure lege.
Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.
What the file says
# Scientific Writing from ENCODE Provenance Generate publication-quality scientific writing from ENCODE analysis records. This skill integrates with `data-provenance` and `cite-encode` to auto-generate methods from logged pipeline runs. Every generated section follows rigorous scientific documentation standards -- complete reporting of all experimental and computational parameters with zero ambiguity. ## When to Use - User wants to write publication-ready methods sections, figure legends, or data availability statements - User asks about "methods section", "figure legend", "scientific writing", or "manuscript preparation" - User needs to auto-generate methods text from logged provenance/analysis steps - User wants templates for supplementary tables, Key Resources Tables, or tool citation formatting - Example queries: "write a methods section for my ChIP-seq analysis", "generate a figure legend for my heatmap", "format my data availability statement" ## Overview …
Read the whole file at its exact version.
How to install
mdr add ammawla/encode-toolkit/scientific-writing@git:20260920.6050003mdr add ammawla/encode-toolkit/scientific-writing@sha256:a02ca55edd4ea00aPin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.
[](https://markdownregistry.com/a/art_of2qe7yfavf7n2oo)
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Versions
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260920.6050003 latest | 2026-09-20 | 6050003 | 47,304 B | A | view · diff |
| git:20260321.d9029d0 | 2026-03-21 | d9029d0 | 45,598 B | A | view · diff |
| git:20260312.be32706 | 2026-03-12 | be32706 | 45,485 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (47304 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
ammawla/encode-toolkit · 20 stars · license AGPL-3.0 · pushed 2026-09-21 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_of2qe7yfavf7n2oo GET https://markdownregistry.com/api/v1/resolve?ref=ammawla/encode-toolkit/scientific-writing GET https://markdownregistry.com/api/v1/blob/a02ca55edd4ea00a573b0a0fb0e9098ebe49d9821094cc0546fe1606bc7b42e3
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