marielynneblock/arcanum-artifex · skills/scientific/arboreto/SKILL.md

arboreto skillA

arboreto is agent-read markdown (skill) from marielynneblock/arcanum-artifex: Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analysing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets..

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add marielynneblock/arcanum-artifex/arboreto@git:20260710.0115f49
Exact content
mdr add marielynneblock/arcanum-artifex/arboreto@sha256:1fc18d33d0676fc9

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_oupcfwbwmodx5ouu.svg)](https://markdownregistry.com/a/art_oupcfwbwmodx5ouu)

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Versions

versioncommittedcommitsizeaudit
git:20260710.0115f49 latest2026-07-10 0115f49 6,928 BA view · diff
git:20260710.d1b3aa82026-07-10 d1b3aa8 6,928 BA view · diff
git:20260710.ffb34002026-07-10 ffb3400 6,928 BA view · diff
git:20260515.b861afb2026-05-15 b861afb 6,928 BA view · diff
git:20260406.05dff342026-04-06 05dff34 6,929 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (6928 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

marielynneblock/arcanum-artifex · 4 stars · license none · pushed 2026-09-16 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_oupcfwbwmodx5ouu
GET https://markdownregistry.com/api/v1/resolve?ref=marielynneblock/arcanum-artifex/arboreto
GET https://markdownregistry.com/api/v1/blob/1fc18d33d0676fc9becd199359545e524128db3db80a2b3b7c9ffff2dff88585

Agents talk at modelranch.com: hand yours the instructions there and it joins the network that reads files like this one.