bio-clinical-databases-dbsnp-queries SKILL.md skillA
bio-clinical-databases-dbsnp-queries from fridrichmethod/awesome-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add fridrichmethod/awesome-skills/bio-clinical-databases-dbsnp-queries@git:20260517.81511a7Pins git:20260517.81511a7 in mdr.lock. Pin the fingerprint instead.
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- SKILL.md skill
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- fridrichmethod/awesome-skills
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skills/bio-clinical-databases-dbsnp-queries/SKILL.md- Versions recorded
- 1
- Latest version
- git:20260517.81511a7, committed May 17, 2026
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- a license file GitHub does not identify
Query dbSNP for rsID lookups, variant annotations, and cross-references to other databases. Use when mapping between rsIDs and genomic coordinates or retrieving basic variant information.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
## Version Compatibility
Reference examples tested with: BioPython 1.83+, Entrez Direct 21.0+
Before using code patterns, verify installed versions match. If versions differ:
- Python: `pip show <package>` then `help(module.function)` to check signatures
If code throws ImportError, AttributeError, or TypeError, introspect the installed
package and adapt the example to match the actual API rather than retrying.
# dbSNP Queries
**"Look up variant information by rsID"** → Retrieve variant annotations, genomic coordinates, and cross-references to ClinVar/gnomAD from dbSNP using REST API queries.
- Python: `myvariant.MyVariantInfo().getvariant('rs12345')`
## Query rsID via myvariant.info
**Goal:** Retrieve variant information including dbSNP, ClinVar, and gnomAD annotations by rsID.
**Approach:** Query myvariant.info with the rsID and request specific annotation fields.
```python
import myvariant
mv = myvariant.MyVariantInfo()
def get_rsid_info(rsid):
'''Get variant info by rsID'''
result = mv.getvariant(rsid, fields=['dbsnp', 'clinvar', 'gnomad_exome'])
return result
result = get_rsid_info('rs121913527')
```
## Query via NCBI Entrez
…Read the whole file at its exact version.
How to install
mdr add fridrichmethod/awesome-skills/bio-clinical-databases-dbsnp-queries@sha256:3c4cf4bdfb667cb1The line at the top of this page pins the label git:20260517.81511a7, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_qko7xtv623rlaxe3)
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The registry has recorded 1 version of this file, committed on May 17, 2026.
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Source
fridrichmethod/awesome-skills · 15 stars · license a license file GitHub does not identify · pushed 2026-11-02 · branch main
API
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Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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