gwas-catalog skillA
gwas-catalog is agent-read markdown (skill) from ammawla/encode-toolkit: Guide for integrating NHGRI-EBI GWAS Catalog associations with ENCODE regulatory data. Use when users need to find GWAS variants in ENCODE peaks, connect regulatory elements to disease associations, or prioritize functional variants using ENCODE annotations. Trigger on: GWAS, genome-wide association, SNP association, trait association, GWAS Catalog, disease association, risk variant, lead SNP, LD proxy..
Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.
What the file says
# Integrating NHGRI-EBI GWAS Catalog with ENCODE Regulatory Data ## When to Use - User wants to intersect ENCODE regulatory elements with GWAS-associated variants - User asks about "GWAS", "genome-wide association", "disease variants", or "trait-associated SNPs" - User needs to find which GWAS hits overlap enhancers, promoters, or TF binding sites - User wants to prioritize GWAS loci by functional annotation from ENCODE data - Example queries: "find GWAS variants in my H3K27ac peaks", "which diabetes GWAS hits overlap pancreas enhancers?", "annotate GWAS loci with ENCODE regulatory marks" Connect genome-wide association study findings with ENCODE functional annotations to identify which regulatory elements harbor disease-associated variants and prioritize causal mechanisms for non-coding GWAS hits. ## Scientific Rationale **The question**: "Which of the disease-associated variants from GWAS fall within active regulatory elements, and what can ENCODE tell us about their functional impact?" …
Read the whole file at its exact version.
How to install
mdr add ammawla/encode-toolkit/gwas-catalog@git:20260920.6050003mdr add ammawla/encode-toolkit/gwas-catalog@sha256:83b443bd5ee01e41Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.
[](https://markdownregistry.com/a/art_t4z6a5rgyb5t7ede)
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Versions
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260920.6050003 latest | 2026-09-20 | 6050003 | 24,357 B | A | view · diff |
| git:20260920.992a807 | 2026-09-20 | 992a807 | 23,593 B | A | view · diff |
| git:20260312.be32706 | 2026-03-12 | be32706 | 23,603 B | A | view · diff |
| git:20260308.ca46af5 | 2026-03-08 | ca46af5 | 23,614 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (24357 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
ammawla/encode-toolkit · 20 stars · license AGPL-3.0 · pushed 2026-09-21 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_t4z6a5rgyb5t7ede GET https://markdownregistry.com/api/v1/resolve?ref=ammawla/encode-toolkit/gwas-catalog GET https://markdownregistry.com/api/v1/blob/83b443bd5ee01e41bb89825aa541560cdf75c6e9c1d60d77933b5f6df6a84384
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