gwas-database SKILL.md skillA
gwas-database from jaechang-hits/sciagent-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add jaechang-hits/sciagent-skills/gwas-database@git:20260827.cbbeb75Pins git:20260827.cbbeb75 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- jaechang-hits/sciagent-skills
- Path
skills/genomics-bioinformatics/databases/gwas-database/SKILL.md- Versions recorded
- 2
- Latest version
- git:20260827.cbbeb75, committed Aug 27, 2026
- First version recorded
- May 28, 2026
- Size
- 26,552 bytes
- Repository stars
- 381
- License
- a license file GitHub does not identify
NHGRI-EBI GWAS Catalog REST API for SNP-trait associations from published GWAS. Query studies, associations, variants, traits, genes, summary stats. Build PRS candidates, analyze pleiotropy, fetch stats for Manhattan plots. No auth.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# GWAS Catalog Database — SNP-Trait Association Queries ## Overview The NHGRI-EBI GWAS Catalog is a curated collection of published genome-wide association studies, mapping SNP-trait associations with genomic context. The REST API provides programmatic access to studies, associations, variants, traits, genes, and summary statistics. All responses are HAL+JSON with embedded `_links` for pagination. ## When to Use - Finding genetic variants associated with a disease or trait (e.g., "which SNPs are linked to type 2 diabetes?") - Retrieving genome-wide significant associations for a specific variant (rs ID) - Exploring the genetic architecture of complex traits (number of loci, effect sizes) - Checking variant pleiotropy (how many traits a single SNP affects) - Downloading summary statistics for meta-analysis or polygenic risk score construction - Identifying published GWAS studies by disease, gene, or PubMed ID - Cross-referencing EFO trait ontology terms with GWAS evidence - Building candidate gene lists from GWAS association regions - Use **omics-plotting** SKILL to render Manhattan, QQ, and forest plots from the summary statistics / association results …
Read the whole file at its exact version.
How to install
mdr add jaechang-hits/sciagent-skills/gwas-database@sha256:03ddcf9fe3f35d0dThe line at the top of this page pins the label git:20260827.cbbeb75, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_vsees5ds24vjg2kt)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 2 versions of this file, between May 28, 2026 and Aug 27, 2026, about one every 91 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260827.cbbeb75 latest | 2026-08-27 | cbbeb75 | 26,552 B | A | view · diff |
| git:20260528.3e3f998 | 2026-05-28 | 3e3f998 | 27,275 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (26552 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
jaechang-hits/sciagent-skills · 381 stars · license a license file GitHub does not identify · pushed 2026-10-16 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_vsees5ds24vjg2kt GET https://markdownregistry.com/api/v1/resolve?ref=jaechang-hits/sciagent-skills/gwas-database GET https://markdownregistry.com/api/v1/blob/03ddcf9fe3f35d0de3df9faafb6c10265b94702b1aae052b546de928667b76f9
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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