mouse-phenome-database SKILL.md skillA
mouse-phenome-database from jaechang-hits/sciagent-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add jaechang-hits/sciagent-skills/mouse-phenome-database@git:20260827.cbbeb75Pins git:20260827.cbbeb75 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- jaechang-hits/sciagent-skills
- Path
skills/genomics-bioinformatics/databases/mouse-phenome-database/SKILL.md- Versions recorded
- 2
- Latest version
- git:20260827.cbbeb75, committed Aug 27, 2026
- First version recorded
- May 28, 2026
- Size
- 27,415 bytes
- Repository stars
- 381
- License
- a license file GitHub does not identify
Retrieve mouse phenotype data from the Jackson Laboratory Mouse Phenome Database (MPD) via its REST API. Browse 520+ projects, look up per-project measure metadata, pull strain-level means (raw or LS-mean adjusted) and per-animal values, find measures by MP/VT ontology terms, and resolve strain nomenclature or gene coordinates. Use for QTL support, cross-strain comparison, mouse model selection, and ontology-driven phenotype discovery. Use monarch-database for disease-gene-phenotype knowledge…
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# mouse-phenome-database ## Overview The Mouse Phenome Database (MPD), maintained at the Jackson Laboratory, catalogs standardized phenotype measurements across inbred, recombinant inbred (e.g., BXD), and Collaborative Cross / Diversity Outbred mouse panels. It aggregates 520+ projects spanning metabolic, cardiovascular, behavioral, hematological, and immunological traits. The REST API at `https://phenome.jax.org/api` is free, requires no authentication, and is documented at <https://phenome.jax.org/about/api>. MPD measurement IDs (`measnum`) are project-scoped 5-digit integers — there is no global "measnum 10001 = body weight" mapping; valid measnums must be discovered per project via the `measureinfo` endpoint. ## When to Use - Selecting inbred strains with extreme phenotypes (highest/lowest fasted glucose, body weight, heart rate, etc.) as experimental models - Pulling individual-animal data from BXD / CC / DO panels for QTL mapping with R/qtl2 or similar tools - Comparing strain means and variance across metabolic, behavioral, or cardiovascular measures for genetic background studies …
Read the whole file at its exact version.
How to install
mdr add jaechang-hits/sciagent-skills/mouse-phenome-database@sha256:f8c8f390e3440b0dThe line at the top of this page pins the label git:20260827.cbbeb75, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_zyr5w33fkvjzk7tf)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 2 versions of this file, between May 28, 2026 and Aug 27, 2026, about one every 91 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260827.cbbeb75 latest | 2026-08-27 | cbbeb75 | 27,415 B | A | view · diff |
| git:20260528.3e3f998 | 2026-05-28 | 3e3f998 | 27,887 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (27415 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
jaechang-hits/sciagent-skills · 381 stars · license a license file GitHub does not identify · pushed 2026-10-16 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_zyr5w33fkvjzk7tf GET https://markdownregistry.com/api/v1/resolve?ref=jaechang-hits/sciagent-skills/mouse-phenome-database GET https://markdownregistry.com/api/v1/blob/f8c8f390e3440b0db37dbba08e0db205955102778bce34118c76a2e095d02c8c
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.