gtex-expression SKILL.md skillA
gtex-expression from ammawla/encode-toolkit is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add ammawla/encode-toolkit/gtex-expression@git:20260920.6050003Pins git:20260920.6050003 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- ammawla/encode-toolkit
- Path
plugin/skills/gtex-expression/SKILL.md- Versions recorded
- 3
- Latest version
- git:20260920.6050003, committed Sep 20, 2026
- First version recorded
- Mar 12, 2026
- Size
- 19,715 bytes
- Repository stars
- 21
- License
- AGPL-3.0
Guide for integrating GTEx tissue expression data with ENCODE regulatory elements. Use when users need to check if a gene is expressed in a tissue, correlate regulatory elements with expression, or validate ENCODE findings against GTEx. Trigger on: GTEx, tissue expression, gene expression levels, expression atlas, eQTL, tissue-specific expression, TPM values.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Integrating GTEx Tissue Expression with ENCODE Regulatory Data Use GTEx gene expression across 54 human tissues to validate ENCODE regulatory element activity, establish enhancer-gene links, and provide tissue-specific expression context for functional genomics findings. ## Scientific Rationale **The question**: "Is the gene near my ENCODE regulatory element actually expressed in the tissue where the element is active?" ENCODE catalogs where regulatory elements exist (enhancers, promoters, insulators) but does not directly measure gene expression across a broad tissue panel. GTEx (Genotype-Tissue Expression) fills this gap by providing RNA-seq-based gene expression measurements across 54 human tissues from ~1,000 post-mortem donors. Integrating the two answers a fundamental question: does the regulatory landscape match the transcriptional output? …
Read the whole file at its exact version.
How to install
mdr add ammawla/encode-toolkit/gtex-expression@sha256:3da4b73a66102cbbThe line at the top of this page pins the label git:20260920.6050003, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_5g2zn7myth77kngn)
4 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 3 versions of this file, between Mar 12, 2026 and Sep 20, 2026, about one every 96 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260920.6050003 latest | 2026-09-20 | 6050003 | 19,715 B | A | view · diff |
| git:20260920.ce7840d | 2026-09-20 | ce7840d | 19,450 B | A | view · diff |
| git:20260312.665e731 | 2026-03-12 | 665e731 | 19,460 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (19715 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
ammawla/encode-toolkit · 21 stars · license AGPL-3.0 · pushed 2026-09-27 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_5g2zn7myth77kngn GET https://markdownregistry.com/api/v1/resolve?ref=ammawla/encode-toolkit/gtex-expression GET https://markdownregistry.com/api/v1/blob/3da4b73a66102cbbd244e452d11addef6b7465cc6b3224bdbfb21e83fe8de735
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
More from ammawla/encode-toolkit
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