extracting-pii-entities SKILL.md skillA

extracting-pii-entities from maziyarpanahi/openmed is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.

Install it, pinned
mdr add maziyarpanahi/openmed/extracting-pii-entities@v1.0

Pins v1.0 in mdr.lock. Pin the fingerprint instead.

Audit grade
A, 17 of 17 checks passed
Kind
SKILL.md skill
Repository
maziyarpanahi/openmed
Path
skills/extracting-pii-entities/SKILL.md
Versions recorded
1
Latest version
v1.0, committed Jul 20, 2026
Size
6,997 bytes
Repository stars
5,784
License
Apache-2.0

Detect PHI/PII spans in clinical text with OpenMed's extract_pii without altering the text. Use when the user wants to find names, dates, MRNs, phone numbers, addresses, SSNs, or other identifiers and get their offsets and labels (not redact them), inspect what would be removed before de-identifying, route spans to a custom redactor, normalize labels to a canonical taxonomy, or filter by confidence and language. Covers extract_pii, the PIIEntity fields, CANONICAL_LABELS / normalize_label, and…

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# Extracting PII Entities

`openmed.extract_pii` finds PHI/PII spans and **returns them without changing the
text**. Use it when you need to *see* the identifiers — to audit, route to a
custom redactor, or decide a policy — rather than produce redacted output. It runs
on-device.

## When to use

- You want the **spans and labels** of identifiers, with the original text intact.
- You need a **preview** of what `deidentify` would act on before committing.
- You are feeding detected spans into a **downstream redactor** (your own,
  Presidio, or `deidentify`).
- You want to **normalize** model labels to a stable canonical taxonomy.

If you instead want redacted/masked output directly, use
`deidentifying-clinical-text` (`openmed.deidentify`). If you need reversible
masking, see `reidentifying-text`.

## extract_pii vs deidentify

| | `extract_pii` | `deidentify` |
| --- | --- | --- |
| Changes the text? | **No** | Yes (mask/remove/replace/hash/shift) |
| Returns | `PredictionResult` (spans) | `DeidentificationResult` (redacted text) |
| Default threshold | `0.5` | `0.7` (safety-biased) |
| Use for | detection, audit, routing | producing safe output |

## Install

```bash
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint
mdr add maziyarpanahi/openmed/extracting-pii-entities@sha256:a96084543874b904

The line at the top of this page pins the label v1.0, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_6n7si7s4b4fvapsb.svg)](https://markdownregistry.com/a/art_6n7si7s4b4fvapsb)

2 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 1 version of this file, committed on Jul 20, 2026.

versioncommittedcommitsizeaudit
v1.0 latest2026-07-20 74f7d6b 6,997 BA view

Audit of the latest version

A  17 of 17 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (6997 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

maziyarpanahi/openmed · 5,784 stars · license Apache-2.0 · pushed 2026-11-07 · branch master

API

GET https://markdownregistry.com/api/v1/artifacts/art_6n7si7s4b4fvapsb
GET https://markdownregistry.com/api/v1/resolve?ref=maziyarpanahi/openmed/extracting-pii-entities
GET https://markdownregistry.com/api/v1/blob/a96084543874b904e5f21a19091627b67884a6ce7fb7262aa4601f1a190b456e

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