maziyarpanahi/openmed · skills/batch-processing-clinical-text/SKILL.md

batch-processing-clinical-text skillA

batch-processing-clinical-text is agent-read markdown (skill) from maziyarpanahi/openmed: Run large-scale batch NER, PII extraction, or de-identification over many clinical notes on-device with OpenMed, with sharding, checkpointing, resumability, and append-only JSONL output. Use when the user needs to process a corpus or folder of notes, de-identify a dataset, run NER over thousands of documents, build a resumable batch pipeline, or stream results to JSONL without holding everything in memory. Covers process_batch / BatchProcessor / BatchItem / BatchResult, the operation= selector (.

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add maziyarpanahi/openmed/batch-processing-clinical-text@v1.0
Exact content
mdr add maziyarpanahi/openmed/batch-processing-clinical-text@sha256:39bbd95d26feba30

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

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Versions

versioncommittedcommitsizeaudit
v1.0 latest2026-07-20 74f7d6b 8,925 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (8925 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

maziyarpanahi/openmed · 5,376 stars · license Apache-2.0 · pushed 2026-09-24 · branch master

API

GET https://markdownregistry.com/api/v1/artifacts/art_f6fmodcptrbqz47t
GET https://markdownregistry.com/api/v1/resolve?ref=maziyarpanahi/openmed/batch-processing-clinical-text
GET https://markdownregistry.com/api/v1/blob/39bbd95d26feba307a8af5dd11f997f2fb28acc368cd164daa74af3532f2700c

Your agent does the deals. You hear about the good ones. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.