25 agent markdown files indexed from maziyarpanahi/openmed. Install any of them pinned to an exact hash with mdr add maziyarpanahi/openmed/<name>.
AGENTS.md agents
maziyarpanahi/openmed · AGENTS.md
git:20260709.7b3dcba · audit A · 5,376 stars
annotating-variants skill
maziyarpanahi/openmed · skills/annotating-variants/SKILL.md · Annotates VCF variants and normalizes HGVS nomenclature with public, license-free annotators (Ensembl VEP REST…
v1.0 · audit A · 5,376 stars
ask-openmed skill
maziyarpanahi/openmed · skills/ask-openmed/SKILL.md · Choose the first OpenMed workflow skill for an intake, privacy, extraction, exchange, or verification request using…
v1.0 · audit A · 5,376 stars
assembling-fhir-bundles skill
maziyarpanahi/openmed · skills/assembling-fhir-bundles/SKILL.md · Package multiple FHIR R4 resources produced from OpenMed output into a single valid transaction Bundle ready to POST to…
v1.0 · audit A · 5,376 stars
auditing-deid-leakage skill
maziyarpanahi/openmed · skills/auditing-deid-leakage/SKILL.md · Adversarially scan already-de-identified clinical text for residual identifiers and emit a leakage report that blocks…
v1.0 · audit A · 5,376 stars
auditing-deidentification-runs skill
maziyarpanahi/openmed · skills/auditing-deidentification-runs/SKILL.md · Produce a signed, reproducible, no-PHI audit trail for an OpenMed de-identification run via deidentify(audit=True). Use…
v1.0 · audit A · 5,376 stars
auditing-part11-trails skill
maziyarpanahi/openmed · skills/auditing-part11-trails/SKILL.md · Generates and verifies 21 CFR Part 11-style audit trails — who/what/when, electronic signatures, and tamper-evidence —…
v1.0 · audit A · 5,376 stars
auditing-safe-harbor-checklist skill
maziyarpanahi/openmed · skills/auditing-safe-harbor-checklist/SKILL.md · Verify OpenMed de-identified output against all 18 HIPAA Safe Harbor identifier categories and report residual…
v1.0 · audit A · 5,376 stars
auditing-subgroup-fairness skill
maziyarpanahi/openmed · skills/auditing-subgroup-fairness/SKILL.md · Audit an OpenMed NER or de-identification model for performance disparities across demographic subgroups (sex, age…
v1.0 · audit A · 5,376 stars
authoring-model-cards skill
maziyarpanahi/openmed · skills/authoring-model-cards/SKILL.md · Generate a model card for an OpenMed clinical NER or de-identification model documenting intended use, quantitative…
v1.0 · audit A · 5,376 stars
batch-processing-clinical-text skill
maziyarpanahi/openmed · skills/batch-processing-clinical-text/SKILL.md · Run large-scale batch NER, PII extraction, or de-identification over many clinical notes on-device with OpenMed, with…
v1.0 · audit A · 5,376 stars
benchmark-pii-recall skill
maziyarpanahi/openmed · skills/benchmark-pii-recall/SKILL.md · Benchmark an OpenMed PII model with synthetic gold spans and report label-aware exact-span and grapheme recall without…
git:20260727.9d7b5a2 · audit A · 5,376 stars
benchmarking-clinical-ner skill
maziyarpanahi/openmed · skills/benchmarking-clinical-ner/SKILL.md · Score an OpenMed clinical or biomedical NER model against a user-supplied gold corpus with entity-level precision…
v1.0 · audit A · 5,376 stars
bridging-presidio-and-spacy skill
maziyarpanahi/openmed · skills/bridging-presidio-and-spacy/SKILL.md · Combine OpenMed clinical NLP with Microsoft Presidio, spaCy, or LangChain through OpenMed's built-in interop adapter…
v1.0 · audit A · 5,376 stars
building-gold-corpus skill
maziyarpanahi/openmed · skills/building-gold-corpus/SKILL.md · Scaffold a synthetic gold-standard annotation project for evaluating OpenMed NER and de-identification models — label…
v1.0 · audit A · 5,376 stars
building-patient-timelines skill
maziyarpanahi/openmed · skills/building-patient-timelines/SKILL.md · Assemble a chronological patient timeline from OpenMed-extracted clinical events, normalizing dates and resolving…
v1.0 · audit A · 5,376 stars
building-with-openmed skill
maziyarpanahi/openmed · skills/building-with-openmed/SKILL.md · Orient and bootstrap any project that uses OpenMed, the on-device clinical and biomedical NLP library, for named-entity…
v1.0 · audit A · 5,376 stars
checking-hipaa-compliance skill
maziyarpanahi/openmed · skills/checking-hipaa-compliance/SKILL.md · Runs a HIPAA Privacy and Security Rule checklist over a data pipeline and produces a gap report before deploying…
v1.0 · audit A · 5,376 stars
choosing-openmed-models skill
maziyarpanahi/openmed · skills/choosing-openmed-models/SKILL.md · Discover and pick the right OpenMed model for a clinical or biomedical task, domain, or language. Use when the user…
v1.0 · audit A · 5,376 stars
coding-hcc-risk-adjustment skill
maziyarpanahi/openmed · skills/coding-hcc-risk-adjustment/SKILL.md · Maps chronic conditions extracted by OpenMed to CMS-HCC V28 risk-adjustment categories and estimates a RAF (Risk…
v1.0 · audit A · 5,376 stars
coding-icd10 skill
maziyarpanahi/openmed · skills/coding-icd10/SKILL.md · Suggests candidate ICD-10-CM diagnosis codes (and ICD-10-PCS procedure codes) for diagnoses and procedures extracted by…
v1.0 · audit A · 5,376 stars
computing-ecqms skill
maziyarpanahi/openmed · skills/computing-ecqms/SKILL.md · Compute electronic clinical quality measures (eCQMs) over structured data using CQL/QDM logic, lifting note-derived…
v1.0 · audit A · 5,376 stars
configuring-privacy-policies skill
maziyarpanahi/openmed · skills/configuring-privacy-policies/SKILL.md · Select and customize OpenMed's seven bundled privacy policy profiles for de-identification, and build custom surrogate…
v1.0 · audit A · 5,376 stars
defining-cohort-phenotypes skill
maziyarpanahi/openmed · skills/defining-cohort-phenotypes/SKILL.md · Authors computable phenotype and cohort definitions in the OHDSI ATLAS / CIRCE style over the OMOP CDM, combining…
v1.0 · audit A · 5,376 stars
deidentify-a-dataset skill
maziyarpanahi/openmed · skills/deidentify-a-dataset/SKILL.md · De-identify selected free-text columns in a local CSV, JSONL, or Parquet dataset with OpenMed and produce a separate…
git:20260727.9d7b5a2 · audit A · 5,376 stars