scdenney/open-science-skills · codex/research-repo/SKILL.md
research-repo skillA
Scaffold or audit an entire research project repository organized around its source library. Use when starting, structuring, organizing, or reviewing a research repo. Build sources/{og,md,unprocessed}, references.bib, a PDF-to-Markdown converter, a repo-local process-source skill, AGENTS.md, .gitignore, .venv, and the relevant analysis/manuscript/review folders; or audit an existing layout. Not for one-PDF intake or publication replication packages.
Latest version
mdr add scdenney/open-science-skills/research-repo@git:20260808.4ee3386Exact content
mdr add scdenney/open-science-skills/research-repo@sha256:26bbedac3d8ad194Badge
[](https://markdownregistry.com/a/art_awywl7fowb3eam3m)
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Versions
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260808.4ee3386 latest | 2026-08-08 | 4ee3386 | 20,656 B | A | view · diff |
| git:20260726.ec471db | 2026-07-26 | ec471db | 20,240 B | A | view · diff |
| git:20260702.0d142fe | 2026-07-02 | 0d142fe | 22,633 B | A | view |
Audit of the latest version
A 17 of 17 checks passed. Deterministic, no model, same answer every run.
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (20656 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
GitHub
scdenney/open-science-skills · 54 stars · license NOASSERTION · pushed 2026-09-05 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_awywl7fowb3eam3m GET https://markdownregistry.com/api/v1/resolve?ref=scdenney/open-science-skills/research-repo GET https://markdownregistry.com/api/v1/blob/26bbedac3d8ad194881e218676a330c7e61f212730fb7125371bbbbd6837ebb4