scdenney/open-science-skills · plugin/skills/research-repo/SKILL.md

research-repo skillA

Name: research-repo
Author: scdenney

research-repo is agent-read markdown (skill) from scdenney/open-science-skills: Scaffold or audit an entire research project repository organized around its source library. Use whenever the user is starting, structuring, organizing, or reviewing a whole project — "set up a research repo", "how should I structure/organize this project", "initialize my sources folder", "new paper or literature-review project", "audit my repo structure", "is my sources folder set up right", "check my project layout". Builds the sources spine (original PDFs, tracked Markdown conversions, a drop.

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version

mdr add scdenney/open-science-skills/research-repo@git:20260902.da5a263

Exact content

mdr add scdenney/open-science-skills/research-repo@sha256:c2d7be1f6bd0b490

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

[![mdr](https://markdownregistry.com/badge/art_cpipsi7bfmlo7vnq.svg)](https://markdownregistry.com/a/art_cpipsi7bfmlo7vnq)

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Versions

version	committed	commit	size	audit
git:20260902.da5a263 latest	2026-09-02	da5a263	22,797 B	A	view · diff
git:20260817.a1ba97b	2026-08-17	a1ba97b	22,806 B	A	view · diff
git:20260808.245a9ea	2026-08-08	245a9ea	21,051 B	A	view · diff
git:20260726.ec471db	2026-07-26	ec471db	20,691 B	A	view · diff
git:20260627.a517e42	2026-06-27	a517e42	23,042 B	A	view

Audit of the latest version

A 17 of 17 checks passed. Deterministic, no model, same answer every run.

pass: Frontmatter block present
pass: Frontmatter declares a name
pass: Frontmatter declares a description
pass: Size between 200 bytes and 200 KB (22797 bytes)
pass: No zero-width or bidi control characters
pass: No instruction hidden inside an HTML comment
pass: No link to an exfiltration or paste host
pass: No credential-shaped string
pass: No instruction to send local credentials anywhere
pass: No text hidden with inline styles
pass: No prompt-injection phrasing
pass: No curl or wget piped into a shell
pass: No recursive delete of root, home or parent
pass: No instruction to read or print local credentials
pass: No base64 blob over 200 characters
pass: No link to a raw IP address
pass: No script tag

Source

GitHub

scdenney/open-science-skills · 54 stars · license NOASSERTION · pushed 2026-09-05 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_cpipsi7bfmlo7vnq
GET https://markdownregistry.com/api/v1/resolve?ref=scdenney/open-science-skills/research-repo
GET https://markdownregistry.com/api/v1/blob/c2d7be1f6bd0b490753ccfbf385374161d40dc59175604733d72da6222fd2a79