scdenney/open-science-skills
89 instruction files for AI agents, collected from scdenney/open-science-skills. Install any of them at an exact version with mdr add scdenney/open-science-skills/<name>.
model-council-voting SKILL.md skill
scdenney/open-science-skills · archive/claude/model-council-voting/SKILL.md · Runs several language models as independent coders on one labeling or discovery task and treats disagreement as data…
git:20261008.eaad168 · audit A · 69 stars
spawn SKILL.md skill
scdenney/open-science-skills · archive/claude/spawn/SKILL.md · Spawns full Claude Code peer sessions in separate terminal panes and git worktrees, real sessions rather than…
git:20261008.eaad168 · audit A · 69 stars
model-council-voting SKILL.md skill
scdenney/open-science-skills · archive/codex/model-council-voting/SKILL.md · Runs several language models as independent coders on the same labeling or discovery task and reads their disagreement…
git:20261008.eaad168 · audit A · 69 stars
spawn SKILL.md skill
scdenney/open-science-skills · archive/codex/spawn/SKILL.md · Spawn full peer Codex or Claude sessions in their own panes and git worktrees — real sessions, not subagents — briefed…
git:20261008.eaad168 · audit A · 69 stars
advisor SKILL.md skill
scdenney/open-science-skills · codex/advisor/SKILL.md · Consult an independent, read-only GPT-6 Astra advisor before committing to a substantive interpretation, approach, or…
git:20261008.c2a591c · audit A · 69 stars
beamer SKILL.md skill
scdenney/open-science-skills · codex/beamer/SKILL.md · House rules and craft for LaTeX Beamer decks (storyboarding, slide prose, frame budgets, layout, XeLaTeX and Korean…
v1.0.0 · audit A · 69 stars
citation-check SKILL.md skill
scdenney/open-science-skills · codex/citation-check/SKILL.md · Audit a manuscript's citations for fabricated sources, DOIs that resolve to the wrong work, in-text and reference-list…
git:20261008.697c89f · audit A · 69 stars
conjoint-cleaning SKILL.md skill
scdenney/open-science-skills · codex/conjoint-cleaning/SKILL.md · Turns a raw Qualtrics conjoint export into analysis-ready long-format data: implementation identification, reshaping…
git:20261008.697c89f · audit A · 69 stars
conjoint-design SKILL.md skill
scdenney/open-science-skills · codex/conjoint-design/SKILL.md · Designs conjoint and factorial-vignette experiments: attributes and restrictions, effective-N power, estimand choice…
git:20261008.cd70e9b · audit A · 69 stars
conjoint-diagnostics SKILL.md skill
scdenney/open-science-skills · codex/conjoint-diagnostics/SKILL.md · Reviews an existing conjoint study for threats to inference and returns severity-ranked findings on design, estimation…
git:20261008.697c89f · audit A · 69 stars
cross-national-design SKILL.md skill
scdenney/open-science-skills · codex/cross-national-design/SKILL.md · Designs multi-country survey experiments: case selection, localization and TRAPD translation, stimulus calibration…
git:20261008.697c89f · audit A · 69 stars
deliverable-intake SKILL.md skill
scdenney/open-science-skills · codex/deliverable-intake/SKILL.md · Turns dictated captures in a deliverable's inbox/ into a proposed planning-wiki diff, classifying and tracing each…
git:20261008.697c89f · audit A · 69 stars
deliverable-lint SKILL.md skill
scdenney/open-science-skills · codex/deliverable-lint/SKILL.md · Reviews a whole deliverable against its manifest without rewriting it — deterministic gate, per-section finders, a…
git:20261008.697c89f · audit A · 69 stars
deliverable-open SKILL.md skill
scdenney/open-science-skills · codex/deliverable-open/SKILL.md · Opens a talk, module, paper, chapter, or referee report as a multi-session deliverable. Interviews the author, then…
git:20261008.697c89f · audit A · 69 stars
diverge SKILL.md skill
scdenney/open-science-skills · codex/diverge/SKILL.md · Generates 3-5 conceptually distinct approaches (Novel, Surprising, Diverse, Conventional) and holds for selection…
git:20261008.697c89f · audit A · 69 stars
doc-to-markdown SKILL.md skill
scdenney/open-science-skills · codex/doc-to-markdown/SKILL.md · Read or convert documents (PDF, Office, OpenDocument, RTF, EPUB, CSV) in a research workflow: read directly or convert…
git:20261008.697c89f · audit A · 69 stars
fact-check SKILL.md skill
scdenney/open-science-skills · codex/fact-check/SKILL.md · Fact-check manuscript claims against their cited sources in a per-source Markdown knowledge base. Use to audit claim…
git:20261008.697c89f · audit A · 69 stars
figure-table-audit SKILL.md skill
scdenney/open-science-skills · codex/figure-table-audit/SKILL.md · End-stage QA for a finished figure and table set (callouts, numbering, cross-references, text-to-exhibit consistency…
git:20261008.697c89f · audit A · 69 stars
figures SKILL.md skill
scdenney/open-science-skills · codex/figures/SKILL.md · Design and format publication-quality figures. Use for chart choice, color, scales, legends, captions, accessibility…
git:20261008.697c89f · audit B · 69 stars
finished SKILL.md skill
scdenney/open-science-skills · codex/finished/SKILL.md · End-of-session closure. Records what changed into the project's own handoff and log files, separating verified from…
git:20261008.697c89f · audit A · 69 stars
hypothesis-building SKILL.md skill
scdenney/open-science-skills · codex/hypothesis-building/SKILL.md · Turns a theory into falsifiable, pre-registerable hypotheses: DGP and DAG, identification, estimands, SESOIs, test…
git:20261008.697c89f · audit A · 69 stars
journal-review SKILL.md skill
scdenney/open-science-skills · codex/journal-review/SKILL.md · Draft a referee report on someone else's manuscript for a journal editor, using a claim ledger, five adversarial…
git:20261028.910eafe · audit A · 69 stars
list-experiment SKILL.md skill
scdenney/open-science-skills · codex/list-experiment/SKILL.md · Designs and diagnoses list experiments (the item count technique): whether indirect measurement is warranted…
git:20261008.697c89f · audit A · 69 stars
literature-review SKILL.md skill
scdenney/open-science-skills · codex/literature-review/SKILL.md · Builds or audits a literature review: evidence map, closest prior work, gap verdict, and synthesis plan. Use to check…
git:20261008.697c89f · audit A · 69 stars
llm-calibration-logprobs SKILL.md skill
scdenney/open-science-skills · codex/llm-calibration-logprobs/SKILL.md · Reads a model's own uncertainty from token log-probabilities: collecting and aggregating label logprobs, confidence…
git:20261008.697c89f · audit A · 69 stars
methods-reporting SKILL.md skill
scdenney/open-science-skills · codex/methods-reporting/SKILL.md · Audit a methods section against a 45-item checklist drawn from the APSA Experimental Section rubric, JARS-Quant…
git:20261008.697c89f · audit A · 69 stars
model-committee SKILL.md skill
scdenney/open-science-skills · codex/model-committee/SKILL.md · Run one consequential, contestable decision through a deliberative committee of GPT-6 Astra and Claude Opus, chaired by…
git:20261008.697c89f · audit A · 69 stars
narrative-building SKILL.md skill
scdenney/open-science-skills · codex/narrative-building/SKILL.md · Drafts or audits a scientific paper's introduction: real-world motivation, evidence audit, theory-to-if-then funnel…
git:20261008.697c89f · audit A · 69 stars
orchestrate SKILL.md skill
scdenney/open-science-skills · codex/orchestrate/SKILL.md · Orchestrate complex work from an active gpt-6-astra or gpt-6.1-sol Codex session. The detected lead owns decomposition…
git:20261008.c2a591c · audit A · 69 stars
paper-review-lite SKILL.md skill
scdenney/open-science-skills · codex/paper-review-lite/SKILL.md · Run a pre-submission manuscript audit covering argument, numerics, references, writing, figures, methods…
git:20261028.910eafe · audit A · 69 stars
paper-tex SKILL.md skill
scdenney/open-science-skills · codex/paper-tex/SKILL.md · Typeset a working paper or journal submission in house-style LaTeX from Markdown, Word, TeX, ODT, RTF, or HTML. Use to…
git:20261008.697c89f · audit A · 69 stars
pre-registration-writing SKILL.md skill
scdenney/open-science-skills · codex/pre-registration-writing/SKILL.md · Writes or reviews a pre-analysis plan before data collection: registry choice (OSF, AEA, AsPredicted, registered…
git:20261008.697c89f · audit A · 69 stars
qualtrics-ops SKILL.md skill
scdenney/open-science-skills · codex/qualtrics-ops/SKILL.md · Operate or audit a live Qualtrics survey via the v3 APIs without breaking fielding: publish gating, quotas, flow…
git:20261008.697c89f · audit A · 69 stars
referee-response SKILL.md skill
scdenney/open-science-skills · codex/referee-response/SKILL.md · Organize an author's response to peer review: extract every referee point, order the revision by dependency, flag…
git:20261008.697c89f · audit A · 69 stars
replication-package SKILL.md skill
scdenney/open-science-skills · codex/replication-package/SKILL.md · Scaffold or audit a social-science replication package, and audit the manuscript and archived research objects against…
git:20261008.697c89f · audit A · 69 stars
research-grill SKILL.md skill
scdenney/open-science-skills · codex/research-grill/SKILL.md · Interviews a researcher in rounds (idea, design, or defend stage) until no decision in a research idea, design, or…
git:20261008.697c89f · audit A · 69 stars
research-repo SKILL.md skill
scdenney/open-science-skills · codex/research-repo/SKILL.md · Scaffold or audit a research-project repository organized around its source library (PDFs, Markdown conversions…
git:20261022.299a868 · audit A · 69 stars
research-wayfinder SKILL.md skill
scdenney/open-science-skills · codex/research-wayfinder/SKILL.md · Plans a research project as a durable decision map, resolving one design decision per session until the design is…
git:20261008.697c89f · audit A · 69 stars
sitrep SKILL.md skill
scdenney/open-science-skills · codex/sitrep/SKILL.md · Start-of-session report on where a repository stands. Reads the project's own handoff and log files, checks live git…
git:20261008.697c89f · audit A · 69 stars
survey-data-audit SKILL.md skill
scdenney/open-science-skills · codex/survey-data-audit/SKILL.md · Audit fielded survey response data for registered elements, data quality, bot and AI-automation screening, and sample…
git:20261008.697c89f · audit A · 69 stars
survey-design SKILL.md skill
scdenney/open-science-skills · codex/survey-design/SKILL.md · Designs survey instruments: question wording, scales and index reliability, flow and treatment placement, pretesting…
git:20261008.697c89f · audit A · 69 stars
tables SKILL.md skill
scdenney/open-science-skills · codex/tables/SKILL.md · Design and format publication-quality tables. Use for column order, row grouping, notes, statistical precision…
git:20261008.697c89f · audit A · 69 stars
text-classification SKILL.md skill
scdenney/open-science-skills · codex/text-classification/SKILL.md · Advises on setting up and validating LLM text classification: codebook, learning regime and model choice, prompts…
git:20261008.697c89f · audit A · 69 stars
topic-modeling SKILL.md skill
scdenney/open-science-skills · codex/topic-modeling/SKILL.md · Advises on setting up and validating topic models for survey and experimental text: discovery vs. measurement…
git:20261008.697c89f · audit A · 69 stars
vlm-ocr-alice SKILL.md skill
scdenney/open-science-skills · codex/vlm-ocr-alice/SKILL.md · Run the GPU part of a $vlm-ocr pipeline on Leiden University's ALICE cluster: decide whether a corpus needs ALICE, pick…
git:20261018.b6541ff · audit A · 69 stars
vlm-ocr SKILL.md skill
scdenney/open-science-skills · codex/vlm-ocr/SKILL.md · OCR scanned or image-only corpora with vision-language models in four phases: `triage` inventories the scans…
git:20261018.4ed74be · audit A · 69 stars
advisor SKILL.md skill
scdenney/open-science-skills · plugin/skills/advisor/SKILL.md · Consults Fable as an independent, read-only reviewer at an effort the caller matches to the question. The calling…
git:20261019.3e1eabe · audit A · 69 stars
beamer SKILL.md skill
scdenney/open-science-skills · plugin/skills/beamer/SKILL.md · House rules and craft for LaTeX Beamer slide decks (lectures, seminars, talks), drawn from the author's own Overleaf…
v1.0.0 · audit A · 69 stars
citation-check SKILL.md skill
scdenney/open-science-skills · plugin/skills/citation-check/SKILL.md · Audits a manuscript's citations for fabricated or nonexistent sources, DOIs that resolve to a different work…
git:20261019.3e1eabe · audit A · 69 stars
conjoint-cleaning SKILL.md skill
scdenney/open-science-skills · plugin/skills/conjoint-cleaning/SKILL.md · Turns a raw Qualtrics conjoint export into an analysis-ready long-format dataset, covering export settings, identifying…
git:20261105.dee0bc5 · audit A · 69 stars
conjoint-design SKILL.md skill
scdenney/open-science-skills · plugin/skills/conjoint-design/SKILL.md · Designs conjoint and factorial-vignette experiments, covering attribute architecture and randomization restrictions…
git:20261105.dee0bc5 · audit A · 69 stars
conjoint-diagnostics SKILL.md skill
scdenney/open-science-skills · plugin/skills/conjoint-diagnostics/SKILL.md · Reviews an existing conjoint study for threats to inference and returns severity-ranked findings on design integrity…
git:20261019.3e1eabe · audit A · 69 stars
cross-national-design SKILL.md skill
scdenney/open-science-skills · plugin/skills/cross-national-design/SKILL.md · Designs multi-country survey experiments, covering case selection with a stated comparative logic, instrument…
git:20261105.dee0bc5 · audit A · 69 stars
deliverable-intake SKILL.md skill
scdenney/open-science-skills · plugin/skills/deliverable-intake/SKILL.md · Turns raw captures (dictated braindumps in a deliverable's inbox/, or recent macwhspr dictation-log entries) into…
git:20261029.5701e42 · audit A · 69 stars
deliverable-lint SKILL.md skill
scdenney/open-science-skills · plugin/skills/deliverable-lint/SKILL.md · Reviews a whole deliverable (talk, course module, paper, chapter, or referee report) against its manifest without…
git:20261105.dee0bc5 · audit A · 69 stars
deliverable-open SKILL.md skill
scdenney/open-science-skills · plugin/skills/deliverable-open/SKILL.md · Opens a deliverable (talk, course module, paper, book chapter, or referee report) for AI-assisted work across sessions…
git:20261105.dee0bc5 · audit A · 69 stars
diverge SKILL.md skill
scdenney/open-science-skills · plugin/skills/diverge/SKILL.md · Generates 3-5 conceptually distinct approaches labeled Novel, Surprising, Diverse, or Conventional, and holds for the…
git:20261105.dee0bc5 · audit A · 69 stars
doc-to-markdown SKILL.md skill
scdenney/open-science-skills · plugin/skills/doc-to-markdown/SKILL.md · Reads or converts documents in a research workflow, including PDF, Word, PowerPoint, Excel, OpenDocument, RTF, EPUB…
git:20261105.dee0bc5 · audit A · 69 stars
fact-check SKILL.md skill
scdenney/open-science-skills · plugin/skills/fact-check/SKILL.md · Checks whether each claim in a manuscript is supported by the source it cites, reading the project's per-source…
git:20261008.697c89f · audit A · 69 stars
figure-table-audit SKILL.md skill
scdenney/open-science-skills · plugin/skills/figure-table-audit/SKILL.md · Runs end-stage QA on a finished figure and table set. Checks callouts, numbering, and cross-references, whether numbers…
git:20261105.dee0bc5 · audit A · 69 stars
figures SKILL.md skill
scdenney/open-science-skills · plugin/skills/figures/SKILL.md · Designs publication figures for social-science manuscripts. Covers chart choice, axes and scales, color and…
git:20261105.dee0bc5 · audit B · 69 stars
finished SKILL.md skill
scdenney/open-science-skills · plugin/skills/finished/SKILL.md · End-of-session closure for a research or code repository. Records what changed into the project's own handoff and log…
git:20261105.dee0bc5 · audit A · 69 stars
hypothesis-building SKILL.md skill
scdenney/open-science-skills · plugin/skills/hypothesis-building/SKILL.md · Turns a theory into falsifiable, pre-registerable hypotheses, covering the DGP and DAG, identification, SATE versus…
git:20261105.dee0bc5 · audit A · 69 stars
journal-review SKILL.md skill
scdenney/open-science-skills · plugin/skills/journal-review/SKILL.md · Drafts a referee report for a journal editor. Builds a ledger of the manuscript's load-bearing claims, runs five…
git:20261028.910eafe · audit A · 69 stars
list-experiment SKILL.md skill
scdenney/open-science-skills · plugin/skills/list-experiment/SKILL.md · Designs and diagnoses list experiments (the item count technique), covering whether indirect measurement is warranted…
git:20261019.3e1eabe · audit A · 69 stars
literature-review SKILL.md skill
scdenney/open-science-skills · plugin/skills/literature-review/SKILL.md · Builds or audits a literature review, producing an evidence map, the closest prior work, source clusters, a gap…
git:20261105.dee0bc5 · audit A · 69 stars
llm-calibration-logprobs SKILL.md skill
scdenney/open-science-skills · plugin/skills/llm-calibration-logprobs/SKILL.md · Reads model uncertainty from token log-probabilities. Covers collecting logprobs and aggregating multi-token labels…
git:20261105.dee0bc5 · audit A · 69 stars
methods-reporting SKILL.md skill
scdenney/open-science-skills · plugin/skills/methods-reporting/SKILL.md · Audits a methods section against a 45-item reporting checklist synthesized from the APSA Experimental Section rubric…
git:20261019.3e1eabe · audit A · 69 stars
model-committee SKILL.md skill
scdenney/open-science-skills · plugin/skills/model-committee/SKILL.md · Runs a deliberative two-model committee of GPT-6 Astra and Claude Opus under a selectable chair, Fable by default, with…
git:20261105.dee0bc5 · audit A · 69 stars
narrative-building SKILL.md skill
scdenney/open-science-skills · plugin/skills/narrative-building/SKILL.md · Drafts or audits a scientific paper’s introduction and framing — the real-world "why", an evidence audit, the funnel…
git:20261105.dee0bc5 · audit A · 69 stars
orchestrate SKILL.md skill
scdenney/open-science-skills · plugin/skills/orchestrate/SKILL.md · Runs a multi-model orchestration workflow led by the session's Fable or Claude Opus model. Sends menial tool-calling…
git:20261008.cd70e9b · audit A · 69 stars
paper-review-lite SKILL.md skill
scdenney/open-science-skills · plugin/skills/paper-review-lite/SKILL.md · Provides a pre-submission manuscript audit covering argument, numerical consistency, references and DOIs, writing…
git:20261028.910eafe · audit A · 69 stars
paper-tex SKILL.md skill
scdenney/open-science-skills · plugin/skills/paper-tex/SKILL.md · Typesets a working paper or journal submission in house-style LaTeX from Markdown, Word (.docx), TeX, ODT, RTF, or…
git:20261105.dee0bc5 · audit A · 69 stars
pre-registration-writing SKILL.md skill
scdenney/open-science-skills · plugin/skills/pre-registration-writing/SKILL.md · Writes or reviews a pre-analysis plan before data collection — registry choice (OSF, AEA RCT Registry, AsPredicted…
git:20261105.dee0bc5 · audit A · 69 stars
presubmit SKILL.md skill
scdenney/open-science-skills · plugin/skills/presubmit/SKILL.md · Launches and configures the standalone presubmit CLI, an API-driven adversarial peer-review pipeline with 40-plus…
git:20261028.910eafe · audit A · 69 stars
qualtrics-ops SKILL.md skill
scdenney/open-science-skills · plugin/skills/qualtrics-ops/SKILL.md · Operates or audits a live Qualtrics survey through the v3 APIs without disrupting fielding. Covers publish gating…
git:20261105.dee0bc5 · audit A · 69 stars
referee-response SKILL.md skill
scdenney/open-science-skills · plugin/skills/referee-response/SKILL.md · Organizes an author’s response to peer review. Extracts every referee and editor point, tags severity and type, orders…
git:20261105.dee0bc5 · audit A · 69 stars
replication-package SKILL.md skill
scdenney/open-science-skills · plugin/skills/replication-package/SKILL.md · Scaffolds or audits a social-science replication package and evaluates the manuscript and archived research objects…
git:20261019.3e1eabe · audit A · 69 stars
research-grill SKILL.md skill
scdenney/open-science-skills · plugin/skills/research-grill/SKILL.md · Interviews a researcher in rounds until an idea, design, or draft has no unexamined decision — numbered questions, each…
git:20261105.dee0bc5 · audit A · 69 stars
research-repo SKILL.md skill
scdenney/open-science-skills · plugin/skills/research-repo/SKILL.md · Scaffolds or audits a research-project repository organized around its source library (original PDFs, tracked Markdown…
git:20261022.299a868 · audit A · 69 stars
research-wayfinder SKILL.md skill
scdenney/open-science-skills · plugin/skills/research-wayfinder/SKILL.md · Plans a research project as a decision map that persists across sessions, resolving one ticket per session until the…
git:20261105.dee0bc5 · audit A · 69 stars
sitrep SKILL.md skill
scdenney/open-science-skills · plugin/skills/sitrep/SKILL.md · Start-of-session situational report for a research or code repository. Reads the handoff, log, or status files the…
git:20261105.dee0bc5 · audit A · 69 stars
survey-data-audit SKILL.md skill
scdenney/open-science-skills · plugin/skills/survey-data-audit/SKILL.md · Audits fielded survey-response data for registered elements, data quality, bot and AI-automation screening, and sample…
git:20261105.dee0bc5 · audit A · 69 stars
survey-design SKILL.md skill
scdenney/open-science-skills · plugin/skills/survey-design/SKILL.md · Designs survey instruments, covering question wording, scale construction and index reliability, flow and treatment…
git:20261105.dee0bc5 · audit A · 69 stars
tables SKILL.md skill
scdenney/open-science-skills · plugin/skills/tables/SKILL.md · Designs publication tables for social-science manuscripts. Covers whether a result belongs in a table at all, column…
git:20261105.dee0bc5 · audit A · 69 stars
text-classification SKILL.md skill
scdenney/open-science-skills · plugin/skills/text-classification/SKILL.md · Advises on setting up LLM-based text classification as a validated measurement design. Covers codebook construction…
git:20261019.3e1eabe · audit A · 69 stars
topic-modeling SKILL.md skill
scdenney/open-science-skills · plugin/skills/topic-modeling/SKILL.md · Advises on setting up and validating topic models for survey and experimental text. Covers the…
git:20261019.3e1eabe · audit A · 69 stars
vlm-ocr-alice SKILL.md skill
scdenney/open-science-skills · plugin/skills/vlm-ocr-alice/SKILL.md · Runs the GPU part of a vlm-ocr pipeline on Leiden University's ALICE cluster. Decides whether a corpus needs ALICE…
git:20261018.b6541ff · audit A · 69 stars
vlm-ocr SKILL.md skill
scdenney/open-science-skills · plugin/skills/vlm-ocr/SKILL.md · OCRs scanned or image-only corpora with vision-language models in four phases. Triage inventories the scans, identifies…
git:20261019.3e1eabe · audit A · 69 stars
Source
github.com/scdenney/open-science-skills · 69 stars · license NOASSERTION · pushed 2026-11-05