bioprobench SKILL.md skillA
bioprobench from pku-yuangroup/openai4s is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add pku-yuangroup/openai4s/bioprobench@git:20260828.e9753bePins git:20260828.e9753be in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- pku-yuangroup/openai4s
- Path
skills/bioprobench/SKILL.md- Versions recorded
- 2
- Latest version
- git:20260828.e9753be, committed Aug 28, 2026
- First version recorded
- Jul 21, 2026
- Size
- 9,298 bytes
- Repository stars
- 662
- License
- MIT
Score an LLM's biological-protocol reasoning on the BioProBench benchmark: protocol QA, step ordering, error detection, protocol generation, and LLM-judged error reasoning; or generate the responses.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# BioProBench — protocol understanding and reasoning Biological protocols are where a plausible-sounding answer becomes a failed experiment: a wrong dosage, a swapped step, an unflagged hazard. BioProBench scores a model on five tasks over real wet-lab protocols, roughly 5,000 instances in the full release. | Task | What it measures | Metrics returned | | --- | --- | --- | | `PQA` | Protocol question answering — reagents, dosages, parameters | `Accuracy`, `Brier_Score`, `Failed_Rate` | | `ORD` | Step ordering — reconstructing procedural sequence | `Exact_Match`, `Kendall_Tau`, `Failed_Rate` | | `ERR` | Error correction — is this modified step valid | `accuracy`, `precision`, `recall`, `f1`, `failed_rate` | | `GEN` | Protocol generation — synthesising steps | `BLEU`, `METEOR`, `ROUGE-L`, `KW_F1`, `Step_Recall`, `Redundancy_Penalty`, `Failed_Rate` | | `REA-ERR` | Error reasoning, graded by an LLM judge | `Consistency`, `Failure_Rate`, `Total`, `Failed`, `Total_Items`, `Judged`, `Unjudged`, `Coverage` | Metric key casing differs per task — `ERR` returns lowercase keys, the rest are capitalised. Read them off the table above rather than guessing. …
Read the whole file at its exact version.
How to install
mdr add pku-yuangroup/openai4s/bioprobench@sha256:56ddbe9da8c2cd8aThe line at the top of this page pins the label git:20260828.e9753be, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_e253qbf6z7a34ikj)
4 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 2 versions of this file, between Jul 21, 2026 and Aug 28, 2026, about one every 38 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260828.e9753be latest | 2026-08-28 | e9753be | 9,298 B | A | view · diff |
| git:20260721.9d92317 | 2026-07-21 | 9d92317 | 9,234 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (9298 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
pku-yuangroup/openai4s · 662 stars · license MIT · pushed 2026-11-03 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_e253qbf6z7a34ikj GET https://markdownregistry.com/api/v1/resolve?ref=pku-yuangroup/openai4s/bioprobench GET https://markdownregistry.com/api/v1/blob/56ddbe9da8c2cd8a041ffc984f59d24372fc74457d0183aabafb4c681c1bda91
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.