archs4-database SKILL.md skillA
archs4-database from jaechang-hits/sciagent-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add jaechang-hits/sciagent-skills/archs4-database@git:20260827.cbbeb75Pins git:20260827.cbbeb75 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- jaechang-hits/sciagent-skills
- Path
skills/genomics-bioinformatics/databases/archs4-database/SKILL.md- Versions recorded
- 2
- Latest version
- git:20260827.cbbeb75, committed Aug 27, 2026
- First version recorded
- May 28, 2026
- Size
- 26,447 bytes
- Repository stars
- 381
- License
- a license file GitHub does not identify
Query ARCHS4 REST API for uniformly processed RNA-seq expression, tissue patterns, co-expression across 1M+ human/mouse samples. Retrieve z-scores, co-expressed genes, samples by metadata, HDF5 matrices. For variant population genetics use gnomad-database; for pathway enrichment use gget-genomic-databases (Enrichr).
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# ARCHS4 Database ## Overview ARCHS4 (All RNA-seq and ChIP-seq Sample and Signature Search) is a resource of uniformly aligned and processed human and mouse RNA-seq data from NCBI GEO and SRA, covering 1 million+ samples. The REST API at `https://maayanlab.cloud/archs4/api/` provides gene-level expression profiles, z-score normalized tissue expression, co-expression networks, and sample metadata search — all without authentication. Large-scale bulk queries can also use the downloadable HDF5 expression matrices. ## When to Use - Retrieving tissue-specific or cell-type-specific expression z-scores for a gene of interest across hundreds of tissue types - Finding genes co-expressed with a query gene (co-expression network construction or guilt-by-association analysis) - Searching for RNA-seq samples by tissue, disease, or metadata keyword to identify candidate datasets for reanalysis - Comparing expression profiles of multiple genes across tissues to prioritize candidates for wet-lab follow-up - Accessing uniformly processed gene expression matrices (HDF5 format) for large-scale cross-study analysis …
Read the whole file at its exact version.
How to install
mdr add jaechang-hits/sciagent-skills/archs4-database@sha256:885f83e0664d091fThe line at the top of this page pins the label git:20260827.cbbeb75, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_esy2q6ojkuz6smrw)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 2 versions of this file, between May 28, 2026 and Aug 27, 2026, about one every 91 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260827.cbbeb75 latest | 2026-08-27 | cbbeb75 | 26,447 B | A | view · diff |
| git:20260528.3e3f998 | 2026-05-28 | 3e3f998 | 27,246 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (26447 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
jaechang-hits/sciagent-skills · 381 stars · license a license file GitHub does not identify · pushed 2026-10-16 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_esy2q6ojkuz6smrw GET https://markdownregistry.com/api/v1/resolve?ref=jaechang-hits/sciagent-skills/archs4-database GET https://markdownregistry.com/api/v1/blob/885f83e0664d091f8b2ca991aa781fd084c158428f990d5d71634020d11c59bd
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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