maziyarpanahi/openmed · skills/benchmarking-clinical-ner/SKILL.md

benchmarking-clinical-ner skillA

benchmarking-clinical-ner is agent-read markdown (skill) from maziyarpanahi/openmed: Score an OpenMed clinical or biomedical NER model against a user-supplied gold corpus with entity-level precision, recall, and F1, then break errors down per label. Use when the user wants a seqeval-style scorecard, strict vs partial (relaxed) span matching, a per-label confusion matrix, false-negative / false-positive examples, or to debug why a model misses entities. Trigger on "evaluate NER", "entity-level F1", "seqeval", "precision recall F1", "confusion matrix", "error analysis", "strict vs.

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add maziyarpanahi/openmed/benchmarking-clinical-ner@v1.0
Exact content
mdr add maziyarpanahi/openmed/benchmarking-clinical-ner@sha256:3b009e05549b3151

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

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Versions

versioncommittedcommitsizeaudit
v1.0 latest2026-07-20 74f7d6b 6,680 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (6680 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

maziyarpanahi/openmed · 5,376 stars · license Apache-2.0 · pushed 2026-09-24 · branch master

API

GET https://markdownregistry.com/api/v1/artifacts/art_imglvik5jdlvm3g2
GET https://markdownregistry.com/api/v1/resolve?ref=maziyarpanahi/openmed/benchmarking-clinical-ner
GET https://markdownregistry.com/api/v1/blob/3b009e05549b315167fb41a54788bacc969545899fde98a7dd2a22944d6cc252

Your agent does the deals. You hear about the good ones. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.