k-dense-ai/scientific-agent-skills · skills/alphagenome/SKILL.md

alphagenome skillA

alphagenome is agent-read markdown (skill) from k-dense-ai/scientific-agent-skills: Look up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18 SHAP feature attributions, plus raw and quantile scores for RNA-seq, DNase, ATAC, ChIP-TF, ChIP-histone, CAGE, PRO-cap, splicing, polyadenylation and contact-map tracks), score variants or scan windows on demand with the AlphaGenome model for human and mouse (variant scoring, in silico mutagenesis, REF-versus-ALT track prediction), and build Atlas website deep links. Use when the u.

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add k-dense-ai/scientific-agent-skills/alphagenome@v1.0
Exact content
mdr add k-dense-ai/scientific-agent-skills/alphagenome@sha256:b8bbe4a35d689a4f

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_h4bkbpldps44gypy.svg)](https://markdownregistry.com/a/art_h4bkbpldps44gypy)

0 badge views in 30 days

Versions

versioncommittedcommitsizeaudit
v1.0 latest2026-09-13 97c5902 15,796 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (15796 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

k-dense-ai/scientific-agent-skills · 44,890 stars · license MIT · pushed 2026-09-14 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_h4bkbpldps44gypy
GET https://markdownregistry.com/api/v1/resolve?ref=k-dense-ai/scientific-agent-skills/alphagenome
GET https://markdownregistry.com/api/v1/blob/b8bbe4a35d689a4fdafb401969f22afa9ca31b2a74a70271f4ec3a8e2a5842e7