exporting-to-fhir SKILL.md skillA
exporting-to-fhir from maziyarpanahi/openmed is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add maziyarpanahi/openmed/exporting-to-fhir@v1.0Pins v1.0 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- maziyarpanahi/openmed
- Path
skills/exporting-to-fhir/SKILL.md- Versions recorded
- 1
- Latest version
- v1.0, committed Jul 20, 2026
- Size
- 10,446 bytes
- Repository stars
- 5,784
- License
- Apache-2.0
Convert OpenMed NER output (entities from openmed.analyze_text) into FHIR R4 resources — Condition, MedicationStatement, Observation — using OpenMed's built-in FHIR R4 export helpers in openmed.clinical.exporters. Covers the verified CodeableConcept builder (coding, codeable_concept, system_uri), deterministic fullUrl references, and OperationOutcome reporting. Use after running OpenMed NER when the user wants standards-conformant FHIR JSON, mentions FHIR…
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Exporting to FHIR OpenMed's NER (`openmed.analyze_text`) returns spans — text, label, offsets, confidence. To make those spans interoperable you wrap each clinically relevant span in a **FHIR R4 resource** (`Condition`, `MedicationStatement`, `Observation`, ...) carrying a coded `CodeableConcept`. OpenMed ships the **mechanical** R4 export helpers for this in `openmed.clinical.exporters`; you own the small amount of clinical mapping (which span becomes which resource). ## When to use Use this after NER, when the consumer is a FHIR system (an EHR, a registry, a data lake on FHIR). Reach for it when the user says "export to FHIR", "make a Condition/Observation", "build a CodeableConcept", or needs RxNorm/LOINC/ICD-10/ SNOMED-coded resources. For packaging many resources into one transaction Bundle, hand off to `assembling-fhir-bundles`. To check the result against US Core, hand off to `validating-us-core`. ## What OpenMed gives you (verified API) OpenMed deliberately ships the *purely mechanical* pieces and leaves clinical judgement to you. The verified entry points: ```python # CodeableConcept builder — openmed/clinical/exporters/codeable_concept_simple.py …
Read the whole file at its exact version.
How to install
mdr add maziyarpanahi/openmed/exporting-to-fhir@sha256:c7793d9cbcc75d66The line at the top of this page pins the label v1.0, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_lmlpks6tnh65jxwj)
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Versions
The registry has recorded 1 version of this file, committed on Jul 20, 2026.
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Source
maziyarpanahi/openmed · 5,784 stars · license Apache-2.0 · pushed 2026-11-07 · branch master
API
GET https://markdownregistry.com/api/v1/artifacts/art_lmlpks6tnh65jxwj GET https://markdownregistry.com/api/v1/resolve?ref=maziyarpanahi/openmed/exporting-to-fhir GET https://markdownregistry.com/api/v1/blob/c7793d9cbcc75d66fb6e30d9fd9cddf5575f6b94cc7c01a91f0edf06fc481271
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.