building-with-openmed SKILL.md skillA
building-with-openmed from maziyarpanahi/openmed is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add maziyarpanahi/openmed/building-with-openmed@v1.0Pins v1.0 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- maziyarpanahi/openmed
- Path
skills/building-with-openmed/SKILL.md- Versions recorded
- 1
- Latest version
- v1.0, committed Jul 20, 2026
- Size
- 5,790 bytes
- Repository stars
- 5,784
- License
- Apache-2.0
Orient and bootstrap any project that uses OpenMed, the on-device clinical and biomedical NLP library, for named-entity recognition, PHI de-identification, FHIR export, and evaluation. Use when the user mentions OpenMed, wants to install it, asks which OpenMed capability or model fits a task, or is starting to build a clinical/medical text pipeline and needs the right entry point.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Building with OpenMed OpenMed is an Apache-2.0, **local-first** Python library for clinical and biomedical NLP. Models download once from the Hugging Face Hub and then run **fully on-device** — no network calls, no telemetry, no raw PHI in logs, caches, or temp files. This skill is the map: it tells you what OpenMed can do and which focused skill (or API) to reach for next. ## When to use this skill Use it to scope a task and pick an entry point. For the actual work, hand off to the focused OpenMed skills (each is grounded in the real API): | Task | Skill / API | | --- | --- | | Find and load a model | `loading-openmed-models`, `choosing-openmed-models` | | Run clinical/biomedical NER | `extracting-clinical-entities` (`openmed.analyze_text`) | | Zero-shot NER (no fine-tune) | `running-zeroshot-ner` (`openmed zero`) | | Remove / mask PHI | `deidentifying-clinical-text` (`openmed.deidentify`) | | Detect PHI spans only | `extracting-pii-entities` (`openmed.extract_pii`) | | Restore masked PHI | `reidentifying-text` (`openmed.reidentify`) | | Pick a privacy policy | `configuring-privacy-policies` (7 bundled profiles) | | Non-English PHI | `deidentifying-multilingual-text` | …
Read the whole file at its exact version.
How to install
mdr add maziyarpanahi/openmed/building-with-openmed@sha256:bb217d7046839340The line at the top of this page pins the label v1.0, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_ngn5s7xupugqlvv7)
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Versions
The registry has recorded 1 version of this file, committed on Jul 20, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (5790 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
maziyarpanahi/openmed · 5,784 stars · license Apache-2.0 · pushed 2026-11-07 · branch master
API
GET https://markdownregistry.com/api/v1/artifacts/art_ngn5s7xupugqlvv7 GET https://markdownregistry.com/api/v1/resolve?ref=maziyarpanahi/openmed/building-with-openmed GET https://markdownregistry.com/api/v1/blob/bb217d7046839340afe97a5d26a0e4b30a6b995f541784c97fecbf2a553f8f0c
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.