aipoch/open-science · resources/skills/scvi-tools/SKILL.md

scvi-tools skillA

Name: scvi-tools
Author: aipoch

scvi-tools is agent-read markdown (skill) from aipoch/open-science: Probabilistic single-cell RNA-seq with scvi-tools — scVI for a batch-corrected latent space, scANVI for semi-supervised label transfer, and Bayesian differential expression. Reach for this skill to integrate scRNA-seq batches, embed cells for clustering, transfer annotations from a reference onto a query, or score differentially expressed genes per cluster. For spatial deconvolution / mapping use the cell2location, DestVI, or Tangram methods instead..

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version

mdr add aipoch/open-science/scvi-tools@git:20260814.c9a70d8

Exact content

mdr add aipoch/open-science/scvi-tools@sha256:6cb6c7b206c66865

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

[![mdr](https://markdownregistry.com/badge/art_rt2a2ug6sp7bioxe.svg)](https://markdownregistry.com/a/art_rt2a2ug6sp7bioxe)

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Versions

version	committed	commit	size	audit
git:20260814.c9a70d8 latest	2026-08-14	c9a70d8	13,360 B	A	view · diff
git:20260714.a2a3282	2026-07-14	a2a3282	9,368 B	A	view

Audit of the latest version

A 17 of 17 checks passed. Deterministic, no model, same answer every run.

pass: Frontmatter block present
pass: Frontmatter declares a name
pass: Frontmatter declares a description
pass: Size between 200 bytes and 200 KB (13360 bytes)
pass: No zero-width or bidi control characters
pass: No instruction hidden inside an HTML comment
pass: No link to an exfiltration or paste host
pass: No credential-shaped string
pass: No instruction to send local credentials anywhere
pass: No text hidden with inline styles
pass: No prompt-injection phrasing
pass: No curl or wget piped into a shell
pass: No recursive delete of root, home or parent
pass: No instruction to read or print local credentials
pass: No base64 blob over 200 characters
pass: No link to a raw IP address
pass: No script tag

Source

GitHub

aipoch/open-science · 3,699 stars · license Apache-2.0 · pushed 2026-09-06 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_rt2a2ug6sp7bioxe
GET https://markdownregistry.com/api/v1/resolve?ref=aipoch/open-science/scvi-tools
GET https://markdownregistry.com/api/v1/blob/6cb6c7b206c668654faa3d69d731a29ed955a43b659e525825aab32b21fc046a