aipoch/open-science
26 agent markdown files indexed from aipoch/open-science. Install any of them pinned to an exact hash with mdr add aipoch/open-science/<name>.
git:20260917.4395768 · audit A · 4,919 stars
alphafold2 skill
aipoch/open-science · resources/skills/alphafold2/SKILL.md · Predict protein structure for monomers and multimers with AlphaFold2 via the ColabFold runner (Mirdita et al. 2022…
git:20260814.c9a70d8 · audit A · 4,919 stars
boltz skill
aipoch/open-science · resources/skills/boltz/SKILL.md · Structure prediction for protein, nucleic-acid, and small-molecule complexes with Boltz-2 (Passaro & Wohlwend et al…
git:20260814.c9a70d8 · audit A · 4,919 stars
borzoi skill
aipoch/open-science · resources/skills/borzoi/SKILL.md · Predict genome-wide functional tracks (RNA-seq, CAGE, DNase, ChIP) from DNA sequence with Borzoi. Use this skill when…
git:20260907.1f786cf · audit A · 4,919 stars
chai1 skill
aipoch/open-science · resources/skills/chai1/SKILL.md · Structure prediction for protein, nucleic-acid, and small-molecule complexes with the Chai-1 foundation model (Chai…
git:20260814.c9a70d8 · audit A · 4,919 stars
compute-env-setup skill
aipoch/open-science · resources/skills/compute-env-setup/SKILL.md · Prepare reproducible setup instructions and validate a user-managed named software environment on an Open-Science SSH…
git:20260917.4395768 · audit A · 4,919 stars
customize skill
aipoch/open-science · resources/skills/customize/SKILL.md · Use when the user wants to create or manage a Specialist agent or create, revise, publish, or delete a Skill through…
git:20260821.3c0aa12 · audit A · 4,919 stars
diffdock skill
aipoch/open-science · resources/skills/diffdock/SKILL.md · Predict small-molecule binding poses with DiffDock-L (Corso et al. 2023/2024, github.com/gcorso/DiffDock) — blind…
git:20260814.c9a70d8 · audit A · 4,919 stars
env-management skill
aipoch/open-science · resources/skills/env-management/SKILL.md · Use when a notebook run fails on a missing package (ImportError, ModuleNotFoundError, "there is no package called")…
git:20260824.727a607 · audit B · 4,919 stars
esmfold2 skill
aipoch/open-science · resources/skills/esmfold2/SKILL.md · Biohub ESMFold2 / ESMFold2-Fast all-atom co-folding (Candido et al. 2026, github.com/Biohub/esm). Single-sequence and…
git:20260814.c9a70d8 · audit A · 4,919 stars
evo2 skill
aipoch/open-science · resources/skills/evo2/SKILL.md · Score, embed, and generate DNA sequences with Evo 2, a long-context genomic foundation model. Use this skill when: (1)…
git:20260907.1f786cf · audit A · 4,919 stars
fair-esm2 skill
aipoch/open-science · resources/skills/fair-esm2/SKILL.md · Embed proteins with Meta AI's ESM-2 (`fair-esm` package). Use this skill when: (1) Extracting per-residue or…
git:20260915.c156910 · audit A · 4,919 stars
figure-composer skill
aipoch/open-science · resources/skills/figure-composer/SKILL.md · Compose one publication-grade multi-panel figure. Start from a one-line claim plus immutable data Artifact Version…
git:20260924.ceb82fd · audit A · 4,919 stars
figure-style skill
aipoch/open-science · resources/skills/figure-style/SKILL.md · Publication-grade correctness and legibility rules for final-deliverable scientific figures, not exploratory plots. Use…
git:20260923.f505fa5 · audit A · 4,919 stars
indication-dossier skill
aipoch/open-science · resources/skills/indication-dossier/SKILL.md · Generate a therapeutic indication dossier. Covers the patient population, epidemiology, disease biology, standard of…
git:20260814.c9a70d8 · audit A · 4,919 stars
ligandmpnn skill
aipoch/open-science · resources/skills/ligandmpnn/SKILL.md · Inverse-fold a backbone with ligand, nucleic-acid, and metal context using LigandMPNN (Dauparas et al. 2023…
git:20260814.c9a70d8 · audit A · 4,919 stars
literature-review skill
aipoch/open-science · resources/skills/literature-review/SKILL.md · Find, verify, and synthesize scientific literature — from "what's the seminal paper for X" through full multi-source…
git:20260916.d082abb · audit A · 4,919 stars
openfold3 skill
aipoch/open-science · resources/skills/openfold3/SKILL.md · Structure prediction using OpenFold3, an open-weights PyTorch reproduction of AlphaFold3 from the AlQuraishi Lab. Use…
git:20260814.c9a70d8 · audit A · 4,919 stars
paper-narrative skill
aipoch/open-science · resources/skills/paper-narrative/SKILL.md · Judge and reshape the story told by an entire paper figure deck. Use when writing or revising a paper to derive a…
git:20260924.ceb82fd · audit A · 4,919 stars
proteinmpnn skill
aipoch/open-science · resources/skills/proteinmpnn/SKILL.md · Inverse-fold a protein backbone (PDB structure) into amino-acid sequence with ProteinMPNN (Dauparas et al. 2022…
git:20260814.c9a70d8 · audit A · 4,919 stars
remote-compute-ssh skill
aipoch/open-science · resources/skills/remote-compute-ssh/SKILL.md · Evaluate and use SSH Remote Compute before choosing where to run GPU, high-memory, parallel, batch, model-inference…
git:20260917.4395768 · audit A · 4,919 stars
scgpt skill
aipoch/open-science · resources/skills/scgpt/SKILL.md · Embed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology. Use this skill…
git:20260907.1f786cf · audit A · 4,919 stars
scvi-tools skill
aipoch/open-science · resources/skills/scvi-tools/SKILL.md · Probabilistic single-cell RNA-seq with scvi-tools — scVI for a batch-corrected latent space, scANVI for semi-supervised…
git:20260912.a35c1db · audit A · 4,919 stars
self-awareness skill
aipoch/open-science · resources/skills/self-awareness/SKILL.md · Inspect Open-Science's JavaScript control REPL, discover managed Project files, Sessions, and Agent Frames, and safely…
git:20260917.4395768 · audit A · 4,919 stars
skill-creator skill
aipoch/open-science · resources/skills/skill-creator/SKILL.md · Create, revise, evaluate, publish, and improve Open-Science Skills through the native JavaScript host.skills composer…
git:20260917.4395768 · audit A · 4,919 stars
solublempnn skill
aipoch/open-science · resources/skills/solublempnn/SKILL.md · Inverse-fold a backbone with SolubleMPNN — ProteinMPNN retrained on a soluble-PDB subset (Dauparas et al. 2022) — for…
git:20260714.a2a3282 · audit A · 4,919 stars
Source
github.com/aipoch/open-science · 4,919 stars · license Apache-2.0 · pushed 2026-09-24