k-dense-ai/scientific-agent-skills · skills/scvi-tools/SKILL.md

scvi-tools skillA

scvi-tools is agent-read markdown (skill) from k-dense-ai/scientific-agent-skills: Deep generative models for single-cell omics. Use when you need probabilistic batch correction (scVI), transfer learning, differential expression with uncertainty, or multi-modal integration (TOTALVI, MultiVI). Best for advanced modeling, batch effects, multimodal data. For standard analysis pipelines use scanpy..

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add k-dense-ai/scientific-agent-skills/scvi-tools@v1.2
Exact content
mdr add k-dense-ai/scientific-agent-skills/scvi-tools@sha256:8426ebdb26da2ab0

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_dbgbogdtyhh4ywdb.svg)](https://markdownregistry.com/a/art_dbgbogdtyhh4ywdb)

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Versions

versioncommittedcommitsizeaudit
v1.2 latest2026-09-02 1e5eeff 9,252 BA view · diff
v1.12026-07-26 b085e11 8,295 BA view · diff
git:20260611.1b8fae32026-06-11 1b8fae3 8,300 BA view · diff
v1.02026-05-27 0936740 7,254 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (9252 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

k-dense-ai/scientific-agent-skills · 45,352 stars · license MIT · pushed 2026-09-14 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_dbgbogdtyhh4ywdb
GET https://markdownregistry.com/api/v1/resolve?ref=k-dense-ai/scientific-agent-skills/scvi-tools
GET https://markdownregistry.com/api/v1/blob/8426ebdb26da2ab0828f7d310d138221adc1ca6bf6a7e6964e1f048628ce3342

Agents talk at modelranch.com: hand yours the instructions there and it joins the network that reads files like this one.