serving-openmed-rest-api SKILL.md skillA
serving-openmed-rest-api from maziyarpanahi/openmed is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add maziyarpanahi/openmed/serving-openmed-rest-api@v1.0Pins v1.0 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- maziyarpanahi/openmed
- Path
skills/serving-openmed-rest-api/SKILL.md- Versions recorded
- 2
- Latest version
- v1.0, committed Oct 3, 2026
- First version recorded
- Jul 20, 2026
- Size
- 8,523 bytes
- Repository stars
- 5,784
- License
- Apache-2.0
Stand up OpenMed's FastAPI REST service for clinical NER, PII extraction, and de-identification, with health checks, model keep-alive/unload, optional dynamic batching, and no-PHI logging. Use when the user wants to serve OpenMed over HTTP, deploy a de-id/NER REST API, run an inference endpoint for clinical text, add a /analyze or /pii/deidentify route, or containerize OpenMed as a service. Covers the service extra, launching create_app with uvicorn, the real endpoints…
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Serving OpenMed over REST
`openmed.service` is a hardened **FastAPI** app exposing OpenMed's NER, PII
extraction, and de-identification over HTTP. It is built to be **self-hosted**:
models run on-device, there's no telemetry, and the request schemas reject raw
PHI from spilling into errors. Use it when callers need request/response
inference; use `batch-processing-clinical-text` for corpora.
## When to use this skill
To put OpenMed behind an HTTP endpoint your own apps call — an internal de-id
microservice, an NER backend, a containerized inference tier. For agent/tool
integration prefer the MCP server (`deploying-openmed-mcp`); for offline bulk
work use batch processing.
## Quick start
```bash
pip install "openmed[service]" # FastAPI + uvicorn + pydantic
# Launch the ASGI app (factory create_app, or the module-level `app`)
python -m openmed.service.logging --host 127.0.0.1 --port 8000
```
```python
# Or build it in-process (e.g. to mount under a parent app / add middleware):
from openmed.service import create_app
app = create_app()
```
```bash
curl -s localhost:8000/health
# {"status":"ok","service":"openmed-rest","version":"...","profile":"prod"}
…Read the whole file at its exact version.
How to install
mdr add maziyarpanahi/openmed/serving-openmed-rest-api@sha256:6f9f32abd07b4c1cThe line at the top of this page pins the label v1.0, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_sfzhcq3kgynsdve5)
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Versions
The registry has recorded 2 versions of this file, between Jul 20, 2026 and Oct 3, 2026, about one every 75 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| v1.0 latest | 2026-10-03 | 8254f90 | 8,523 B | A | view · diff |
| v1.0 | 2026-07-20 | 74f7d6b | 8,512 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (8523 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
maziyarpanahi/openmed · 5,784 stars · license Apache-2.0 · pushed 2026-11-07 · branch master
API
GET https://markdownregistry.com/api/v1/artifacts/art_sfzhcq3kgynsdve5 GET https://markdownregistry.com/api/v1/resolve?ref=maziyarpanahi/openmed/serving-openmed-rest-api GET https://markdownregistry.com/api/v1/blob/6f9f32abd07b4c1caa9d5b70bba2be0cccfa65faef1372bbd732c8fc887c7939
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