building-gold-corpus SKILL.md skillA
building-gold-corpus from maziyarpanahi/openmed is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add maziyarpanahi/openmed/building-gold-corpus@v1.0Pins v1.0 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- maziyarpanahi/openmed
- Path
skills/building-gold-corpus/SKILL.md- Versions recorded
- 1
- Latest version
- v1.0, committed Jul 20, 2026
- Size
- 6,768 bytes
- Repository stars
- 5,784
- License
- Apache-2.0
Scaffold a synthetic gold-standard annotation project for evaluating OpenMed NER and de-identification models — label schema, annotation guidelines, BRAT or Label Studio config, and disjoint train/dev/test splits. Use when the user wants to create eval fixtures, set up annotation, define a label set, write guidelines, configure an annotation tool, or build a held-out gold set for the OpenMed eval harness. Trigger on "gold corpus", "annotation project", "label schema", "annotation guidelines…
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Building a Gold Corpus
You can't evaluate what you can't measure against. This skill scaffolds a
gold-standard annotation project whose output drops straight into the OpenMed
eval harness as fixtures. The hard rule: **anything committed to the repo is
synthetic**. Licensed clinical corpora (i2b2, n2c2, MIMIC) are DUA-gated — use
them at eval time from the user's own copy, never check them in.
## When to use this skill
- You need eval fixtures for `benchmarking-clinical-ner` or
`evaluating-with-leakage-gates` and have none.
- You're standing up an annotation effort: schema, guidelines, tool config.
- You need disciplined train/dev/test splits with no leakage between them.
- You want a small **synthetic** golden set you can commit and gate on in CI.
## The OpenMed fixture shape (your target output)
Annotations must serialize to character-offset spans the harness understands:
```json
{
"fixtures": [
{
"id": "synthetic-0001",
"language": "en",
"text": "Ms. Jane Roe (MRN 0000000) seen 2099-01-02 for type 2 diabetes.",
"gold_spans": [
{"start": 4, "end": 12, "label": "PERSON"},
{"start": 18, "end": 25, "label": "ID_NUM"},
…Read the whole file at its exact version.
How to install
mdr add maziyarpanahi/openmed/building-gold-corpus@sha256:af0190ab9f3e2b4cThe line at the top of this page pins the label v1.0, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_ygkvxwi46hndxo2s)
1 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Jul 20, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (6768 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
maziyarpanahi/openmed · 5,784 stars · license Apache-2.0 · pushed 2026-11-07 · branch master
API
GET https://markdownregistry.com/api/v1/artifacts/art_ygkvxwi46hndxo2s GET https://markdownregistry.com/api/v1/resolve?ref=maziyarpanahi/openmed/building-gold-corpus GET https://markdownregistry.com/api/v1/blob/af0190ab9f3e2b4c58cc7bf226194ab2a17e54c7654caf86ccf84f9d0fefe272
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.