aperivue/medsci-skills

aperivue/medsci-skills · CLAUDE.md

aperivue/medsci-skills · skills/academic-aio/SKILL.md · Medical AI paper optimization for AI search engines (Perplexity, ChatGPT web, Elicit, Consensus, SciSpace) and…

aperivue/medsci-skills · skills/add-journal/SKILL.md · Add a new journal to the MedSci Skills profile database. Extracts metadata from author guidelines, generates…

aperivue/medsci-skills · skills/analyze-stats/SKILL.md · Statistical analysis for medical research papers. Generates reproducible Python/R code with publication-ready tables…

aperivue/medsci-skills · skills/architecture-zoo/SKILL.md · Choose a model architecture for a medical-imaging research question before scaffolding. Maps the task (classification…

aperivue/medsci-skills · skills/author-strategy/SKILL.md · PubMed author profile analysis. Author name → PubMed fetch → study-type classification → visualization → strategy…

aperivue/medsci-skills · skills/batch-cohort/SKILL.md · Generate N analysis scripts from a single methodology template × multiple exposure/outcome combinations. The "80-person…

aperivue/medsci-skills · skills/calc-sample-size/SKILL.md · Interactive sample size calculator for medical research. Decision-tree guided test selection, reproducible R/Python…

aperivue/medsci-skills · skills/check-reporting/SKILL.md · Check manuscript compliance with medical research reporting guidelines. Supports 49 guidelines including STROBE…

aperivue/medsci-skills · skills/clean-data/SKILL.md · Interactive data profiling and cleaning assistant for medical research. Three-stage workflow (profile, flag…

aperivue/medsci-skills · skills/contribute/SKILL.md · Offer your local changes back to the project — a journal profile you added, a checklist item you fixed, a skill you…

aperivue/medsci-skills · skills/cross-national/SKILL.md · End-to-end cross-national comparison study using KNHANES + NHANES + CHNS (or other parallel surveys). Variable…

aperivue/medsci-skills · skills/define-variables/SKILL.md · Literature-grounded variable operationalization for observational research. Turns a data dictionary + research question…

aperivue/medsci-skills · skills/deidentify/SKILL.md · De-identify clinical research data before LLM-assisted analysis. Standalone Python CLI detects PHI via regex +…

aperivue/medsci-skills · skills/design-ai-benchmarking/SKILL.md · Design and validity review for studies that benchmark one or more AI systems against a human-expert panel as the…

aperivue/medsci-skills · skills/design-study/SKILL.md · Study design and validity review for radiology and medical AI research. Identifies analysis unit, cohort logic, leakage…

aperivue/medsci-skills · skills/explainability/SKILL.md · Produce or audit the interpretability/explainability analysis of a medical-imaging model — Grad-CAM / Grad-CAM++ /…

aperivue/medsci-skills · skills/fill-icmje-coi/SKILL.md · Batch-generate per-author ICMJE Conflict of Interest Disclosure Forms (`coi_disclosure.docx`) for manuscript…

aperivue/medsci-skills · skills/fill-protocol/SKILL.md · Fill institutional Word form templates (.doc/.docx) for IRB protocols, ethics applications, grant proposals, and other…

aperivue/medsci-skills · skills/find-cohort-gap/SKILL.md · Research gap finder for longitudinal cohort databases. Profiles cohort strengths, matches PI expertise, scans…

aperivue/medsci-skills · skills/find-journal/SKILL.md · Journal recommendation engine for medical manuscripts. 2-pass matching against a curated public profile library plus…

aperivue/medsci-skills · skills/fulltext-retrieval/SKILL.md · Batch download open-access PDFs by DOI using legitimate OA APIs (Unpaywall, PMC, OpenAlex, Crossref). Optional…

aperivue/medsci-skills · skills/generate-codebook/SKILL.md · Generate a citable data dictionary / codebook from a tabular dataset (CSV/TSV/Excel/Parquet/Stata/SAS). Profiles every…

aperivue/medsci-skills · skills/grant-builder/SKILL.md · Grant and challenge proposal support for radiology and medical AI projects. Structures significance, innovation…

aperivue/medsci-skills · skills/humanize/SKILL.md · Detect and remove AI writing patterns from academic manuscripts and response-to-reviewers letters. Scans for 27 common…

aperivue/medsci-skills · skills/intake-project/SKILL.md · Intake and normalize a new radiology research project. Classifies project type, summarizes current state, identifies…

aperivue/medsci-skills · skills/lit-sync/SKILL.md · Sync research references from .bib files to Zotero library + Obsidian literature notes. Extract cross-cutting concept…

aperivue/medsci-skills · skills/ma-scout/SKILL.md · Meta-analysis topic discovery and feasibility assessment. Professor-first (profile → gap) or Topic-first (question →…

aperivue/medsci-skills · skills/make-figures/SKILL.md · Generate publication-ready figures and visual abstracts for medical research papers. Supports ROC curves, forest plots…

aperivue/medsci-skills · skills/manage-project/SKILL.md · Research project management for medical manuscripts. Scaffold project structure, track writing progress across phases…

aperivue/medsci-skills · skills/manage-refs/SKILL.md · Cross-cutting reference manager for medical manuscripts. Single entry point for citation-key validation, journal-CSL…

aperivue/medsci-skills · skills/meta-analysis/SKILL.md · Systematic review and meta-analysis pipeline for medical research. Covers protocol registration (PROSPERO), search…

aperivue/medsci-skills · skills/mllm-eval/SKILL.md · Design or audit a model-agnostic evaluation harness for an LLM or multimodal LLM on a clinical task (radiology report…

aperivue/medsci-skills · skills/model-card/SKILL.md · Generate the documentation an engineer-built medical-imaging model must carry — a Model Card (Mitchell et al. 2019), a…

aperivue/medsci-skills · skills/model-evaluation/SKILL.md · Compute and report task-correct held-out metrics for a trained medical-imaging model — segmentation (Dice plus a…

aperivue/medsci-skills · skills/model-scaffold/SKILL.md · Generate a reproducible, runnable PyTorch training repo for a medical-imaging task — segmentation, classification…

aperivue/medsci-skills · skills/model-sourcing/SKILL.md · Vet the concrete third-party model a study will be built on — this repository, this revision, this checkpoint — not the…

aperivue/medsci-skills · skills/model-validation/SKILL.md · Design or audit the clinical-validation study for an engineer-built medical-imaging model (segmentation…

aperivue/medsci-skills · skills/obsidian-paper-vault/SKILL.md · Turn a folder of research PDFs into an Obsidian knowledge vault — consistently formatted literature notes with…

aperivue/medsci-skills · skills/orchestrate/SKILL.md · General-purpose research orchestrator. Routes ambiguous or multi-step requests to the right skill(s) from the…

aperivue/medsci-skills · skills/peer-review/SKILL.md · Peer review assistant for medical journals. Generates structured review drafts with journal-specific formatting…

aperivue/medsci-skills · skills/polish-language/SKILL.md · Academic English consistency linting and non-native (ESL) language polish for medical manuscripts. Deterministically…

aperivue/medsci-skills · skills/preprocess-imaging/SKILL.md · Design or audit the data-preparation stage of a medical-imaging model — DICOM/NIfTI intake, resampling and intensity…

aperivue/medsci-skills · skills/present-paper/SKILL.md · Academic presentation preparation — paper-driven (journal club, grand rounds, seminar) and lecture/teaching decks…

aperivue/medsci-skills · skills/profile-imaging/SKILL.md · Profile a medical-imaging dataset before any modelling decision is made — the acquisition grid, voxel spacing and…

aperivue/medsci-skills · skills/publish-skill/SKILL.md · Convert a personal agent skill into a distributable, open-source-ready skill. Runs PII audit, generalization, license…

aperivue/medsci-skills · skills/radiomics-ml/SKILL.md · Produce or audit a radiomics / tabular clinical-ML study — imaging or clinical features → any classical learner…

aperivue/medsci-skills · skills/render-pdf-doc/SKILL.md · Render academic Markdown documents (English or Korean) to publication-quality PDF via pandoc + xelatex. Targets…

aperivue/medsci-skills · skills/replicate-study/SKILL.md · Replicate an existing cohort study's methodology on a different database. Extracts study design from a source paper…

aperivue/medsci-skills · skills/review-paper/SKILL.md · Scaffold and draft medical/AI literature reviews (narrative, scoping PRISMA-ScR, or systematic). Asks for the spine…

aperivue/medsci-skills · skills/revise/SKILL.md · Parse peer reviewer comments and generate a structured Response to Reviewers document with tracked manuscript changes…

aperivue/medsci-skills · skills/search-lit/SKILL.md · Literature search and citation management for medical research. Searches PubMed, Semantic Scholar, and bioRxiv/medRxiv…

aperivue/medsci-skills · skills/self-review/SKILL.md · Pre-submission self-review for the user's own manuscripts, applying a reviewer perspective. Systematic check across 10…

aperivue/medsci-skills · skills/setup-medsci/SKILL.md · Diagnostic checklist for the MedSci Skills runtime. Verifies Python, R, Node, Claude Code, Git, Zotero, and configured…

aperivue/medsci-skills · skills/sync-submission/SKILL.md · Audit SSOT-to-submission drift and create journal submission manifests from canonical manuscript artifacts.

aperivue/medsci-skills · skills/uncertainty-imaging/SKILL.md · Design or audit the uncertainty-quantification, out-of-distribution (OOD) detection, and selective-prediction layer of…

aperivue/medsci-skills · skills/verify-refs/SKILL.md · Audit-only verification of manuscript references against PubMed and CrossRef. Detects fabricated or mismatched…

aperivue/medsci-skills · skills/version-dataset/SKILL.md · Dataset version control for research reproducibility. Builds a deterministic content-hash manifest of a dataset (file…

aperivue/medsci-skills · skills/write-paper/SKILL.md · Full-pipeline medical/scientific paper writing. 8-phase IMRAD workflow from outline to submission-ready manuscript…

aperivue/medsci-skills · skills/write-protocol/SKILL.md · IRB/ethics committee research protocol generator. Produces 4 core sections (Background, Study Design, Sample Size…

aperivue/medsci-skills · tests/fixtures/phase_budget/real_defect/self-review/SKILL.md