65 instruction files for AI agents, collected from aperivue/medsci-skills. Install any of them at an exact version with mdr add aperivue/medsci-skills/<name>.
AGENTS.md AGENTS.md file
aperivue/medsci-skills · AGENTS.md
git:20260930.fd8f1e2 · audit A · 366 stars
CLAUDE.md CLAUDE.md file
aperivue/medsci-skills · CLAUDE.md
git:20261016.e6f0589 · audit A · 366 stars
academic-aio SKILL.md skill
aperivue/medsci-skills · skills/academic-aio/SKILL.md · Use when a medical AI paper should be found and cited by AI search engines and RAG tools. Optimizes the title…
git:20261003.182e0ff · audit A · 366 stars
add-journal SKILL.md skill
aperivue/medsci-skills · skills/add-journal/SKILL.md · Use when a target journal has no profile yet. Reads the journal's author guidelines and writes a detailed /write-paper…
git:20260930.c8ed96c · audit A · 366 stars
analyze-stats SKILL.md skill
aperivue/medsci-skills · skills/analyze-stats/SKILL.md · Use when data needs statistical analysis. Runs reproducible Python/R code for Table 1, diagnostic accuracy, agreement…
git:20261004.a78d7a4 · audit A · 366 stars
architecture-zoo SKILL.md skill
aperivue/medsci-skills · skills/architecture-zoo/SKILL.md · Renamed to /model-selection in v6 (removed in v7).
git:20260930.e4f475f · audit A · 366 stars
author-strategy SKILL.md skill
aperivue/medsci-skills · skills/author-strategy/SKILL.md · Use when analyzing a researcher's publication record from PubMed. Fetches an author's papers, classifies study types…
git:20261002.a99bcb0 · audit A · 366 stars
batch-cohort SKILL.md skill
aperivue/medsci-skills · skills/batch-cohort/SKILL.md · Use when one validated cohort analysis must be repeated across many exposure/outcome pairs. Generates one R/Python…
git:20261004.5b44a65 · audit A · 366 stars
calc-sample-size SKILL.md skill
aperivue/medsci-skills · skills/calc-sample-size/SKILL.md · Use when planning how many patients or cases a study needs before data collection (power analysis, IRB justification)…
git:20260930.c8ed96c · audit A · 366 stars
check-reporting SKILL.md skill
aperivue/medsci-skills · skills/check-reporting/SKILL.md · Use when auditing a manuscript item by item against a reporting guideline or risk-of-bias tool. Covers 49 reporting…
git:20261004.5cd6db2 · audit A · 366 stars
clean-data SKILL.md skill
aperivue/medsci-skills · skills/clean-data/SKILL.md · Use when a clinical CSV/Excel dataset needs profiling and cleaning before analysis (missing values, outliers…
git:20260930.c8ed96c · audit A · 366 stars
contribute SKILL.md skill
aperivue/medsci-skills · skills/contribute/SKILL.md · Use when sending local changes back to the project (an added journal profile, a fixed checklist item, an adapted skill)…
git:20261002.0985a27 · audit A · 366 stars
cross-national SKILL.md skill
aperivue/medsci-skills · skills/cross-national/SKILL.md · Use when comparing an exposure-outcome association across countries with parallel national surveys (KNHANES, NHANES…
git:20261002.4215513 · audit A · 366 stars
define-variables SKILL.md skill
aperivue/medsci-skills · skills/define-variables/SKILL.md · Use when exposure, outcome, covariate or eligibility definitions and cutoffs need a citable basis before the protocol…
git:20261004.5b44a65 · audit A · 366 stars
deidentify SKILL.md skill
aperivue/medsci-skills · skills/deidentify/SKILL.md · Use when clinical data may contain PHI and must be de-identified before any LLM-assisted analysis. A local Python…
git:20261029.6e36b17 · audit A · 366 stars
design-ai-benchmarking SKILL.md skill
aperivue/medsci-skills · skills/design-ai-benchmarking/SKILL.md · Use when designing a study that benchmarks AI systems against a human-expert panel, before data collection. Plans the…
git:20260930.c8ed96c · audit A · 366 stars
design-study SKILL.md skill
aperivue/medsci-skills · skills/design-study/SKILL.md · Use when checking a radiology or medical AI study design before drafting or submission. Reviews the analysis unit…
git:20260930.c8ed96c · audit A · 366 stars
explainability SKILL.md skill
aperivue/medsci-skills · skills/explainability/SKILL.md · Renamed to /model-assessment in v6 (removed in v7).
git:20260930.e4f475f · audit A · 366 stars
fill-icmje-coi SKILL.md skill
aperivue/medsci-skills · skills/fill-icmje-coi/SKILL.md · Use when each author needs an ICMJE Conflict of Interest disclosure form (coi_disclosure.docx) for submission. Clones a…
git:20261002.2e5c829 · audit A · 366 stars
fill-protocol SKILL.md skill
aperivue/medsci-skills · skills/fill-protocol/SKILL.md · Use when an institutional Word form (.doc/.docx IRB protocol, ethics application, grant template) must be filled…
git:20261004.5b44a65 · audit A · 366 stars
find-cohort-gap SKILL.md skill
aperivue/medsci-skills · skills/find-cohort-gap/SKILL.md · Use when looking for research topics a longitudinal cohort database can answer (NHIS, UK Biobank, an institutional EMR…
git:20261003.efd513d · audit A · 366 stars
find-journal SKILL.md skill
aperivue/medsci-skills · skills/find-journal/SKILL.md · Use when choosing where to submit a manuscript. Matches the abstract against curated journal profiles and returns…
git:20261002.f48535d · audit A · 366 stars
fulltext-retrieval SKILL.md skill
aperivue/medsci-skills · skills/fulltext-retrieval/SKILL.md · Use when you need full-text PDFs for a list of DOIs, such as a meta-analysis screening set. Batch-downloads open-access…
git:20261002.d7865ce · audit A · 366 stars
generate-codebook SKILL.md skill
aperivue/medsci-skills · skills/generate-codebook/SKILL.md · Use when a tabular dataset (CSV, Excel, Parquet, Stata, SAS) needs a data dictionary. Profiles every variable (type…
git:20261002.1e9aa4f · audit A · 366 stars
grant-builder SKILL.md skill
aperivue/medsci-skills · skills/grant-builder/SKILL.md · Use when drafting a grant or challenge proposal for a radiology or medical AI project, including a Korean government…
git:20260930.c8ed96c · audit A · 366 stars
humanize SKILL.md skill
aperivue/medsci-skills · skills/humanize/SKILL.md · Use when a manuscript or response-to-reviewers letter reads as AI-written. Scans for 27 AI writing patterns and…
git:20261002.b32d755 · audit A · 366 stars
imaging-data SKILL.md skill
aperivue/medsci-skills · skills/imaging-data/SKILL.md · Use when preparing a medical-imaging dataset (DICOM/NIfTI) for modelling. Profiles spacing, orientation, intensity…
git:20261003.87332ea · audit A · 366 stars
intake-project SKILL.md skill
aperivue/medsci-skills · skills/intake-project/SKILL.md · Use when starting or inheriting a radiology research project and need to know what it is. Classifies the project type…
git:20261004.5b44a65 · audit A · 366 stars
lit-sync SKILL.md skill
aperivue/medsci-skills · skills/lit-sync/SKILL.md · Use when references in a .bib file (often from /search-lit) should land in Zotero and Obsidian. Syncs them to the…
git:20261002.cef9176 · audit B · 366 stars
ma-scout SKILL.md skill
aperivue/medsci-skills · skills/ma-scout/SKILL.md · Use when looking for a meta-analysis topic before any protocol exists. Starts from a professor's publication profile or…
git:20261004.5b44a65 · audit A · 366 stars
make-figures SKILL.md skill
aperivue/medsci-skills · skills/make-figures/SKILL.md · Use when a paper needs publication-ready figures or a visual abstract. Makes ROC, forest, calibration, Kaplan-Meier and…
git:20261004.5b44a65 · audit A · 366 stars
manage-project SKILL.md skill
aperivue/medsci-skills · skills/manage-project/SKILL.md · Use when managing a manuscript project over time. Scaffolds the project structure, tracks writing progress across…
git:20261002.19cfac0 · audit A · 366 stars
manage-refs SKILL.md skill
aperivue/medsci-skills · skills/manage-refs/SKILL.md · Use when references must be written, rendered or converted. Checks [@key] citation keys, renders the reference list…
git:20261026.5bca7e9 · audit A · 366 stars
meta-analysis SKILL.md skill
aperivue/medsci-skills · skills/meta-analysis/SKILL.md · Use when running a systematic review and meta-analysis, DTA or intervention. Covers PROSPERO protocol, search…
git:20261016.b7736c3 · audit A · 366 stars
mllm-eval SKILL.md skill
aperivue/medsci-skills · skills/mllm-eval/SKILL.md · Use when designing or auditing how an LLM or multimodal LLM is evaluated on a clinical task (report generation, VQA…
git:20261004.2b37f5b · audit A · 366 stars
model-assessment SKILL.md skill
aperivue/medsci-skills · skills/model-assessment/SKILL.md · Use when validating or evaluating a trained medical-imaging model. Audits split leakage and validation design, computes…
git:20261003.5e119f6 · audit A · 366 stars
model-card SKILL.md skill
aperivue/medsci-skills · skills/model-card/SKILL.md · Use when a trained medical-imaging model needs its documentation. Fills a Model Card and a Datasheet for its dataset…
git:20261003.28fe41b · audit A · 366 stars
model-evaluation SKILL.md skill
aperivue/medsci-skills · skills/model-evaluation/SKILL.md · Renamed to /model-assessment in v6 (removed in v7).
git:20260930.e4f475f · audit A · 366 stars
model-scaffold SKILL.md skill
aperivue/medsci-skills · skills/model-scaffold/SKILL.md · Use when you need a runnable PyTorch training repo for a medical-imaging task (segmentation, classification, detection…
git:20261004.5b44a65 · audit A · 366 stars
model-selection SKILL.md skill
aperivue/medsci-skills · skills/model-selection/SKILL.md · Use when choosing the model for a medical-imaging study. Picks a paper-grounded architecture family (CNN/ViT…
git:20261002.0400856 · audit A · 366 stars
model-sourcing SKILL.md skill
aperivue/medsci-skills · skills/model-sourcing/SKILL.md · Renamed to /model-selection in v6 (removed in v7).
git:20260930.e4f475f · audit A · 366 stars
model-validation SKILL.md skill
aperivue/medsci-skills · skills/model-validation/SKILL.md · Renamed to /model-assessment in v6 (removed in v7).
git:20260930.e4f475f · audit A · 366 stars
obsidian-paper-vault SKILL.md skill
aperivue/medsci-skills · skills/obsidian-paper-vault/SKILL.md · Use when turning a folder of research PDFs into Obsidian notes, even if Obsidian is not named. Writes one templated…
git:20261004.5b44a65 · audit A · 366 stars
orchestrate SKILL.md skill
aperivue/medsci-skills · skills/orchestrate/SKILL.md · Use when the user describes a research goal without naming a skill, or the task spans several skills. Classifies the…
git:20261016.b7736c3 · audit A · 366 stars
peer-review SKILL.md skill
aperivue/medsci-skills · skills/peer-review/SKILL.md · Use when reviewing someone else's manuscript for a journal, such as after a review invitation or for a revised R1/R2…
git:20261005.b7f0eaf · audit B · 366 stars
polish-language SKILL.md skill
aperivue/medsci-skills · skills/polish-language/SKILL.md · Use when a manuscript needs a copy-edit for consistency and non-native English clarity. Flags abbreviation, US/UK…
git:20260930.c8ed96c · audit A · 366 stars
preprocess-imaging SKILL.md skill
aperivue/medsci-skills · skills/preprocess-imaging/SKILL.md · Renamed to /imaging-data in v6 (removed in v7).
git:20260930.e4f475f · audit A · 366 stars
present-paper SKILL.md skill
aperivue/medsci-skills · skills/present-paper/SKILL.md · Use when preparing an academic talk such as a journal club, grand rounds, seminar, conference presentation, or…
git:20261004.5b44a65 · audit A · 366 stars
profile-imaging SKILL.md skill
aperivue/medsci-skills · skills/profile-imaging/SKILL.md · Renamed to /imaging-data in v6 (removed in v7).
git:20260930.e4f475f · audit A · 366 stars
publish-skill SKILL.md skill
aperivue/medsci-skills · skills/publish-skill/SKILL.md · Use when turning a personal agent skill into an open-source, distributable one. Runs a PII audit, generalizes personal…
git:20261004.5b44a65 · audit A · 366 stars
radiomics-ml SKILL.md skill
aperivue/medsci-skills · skills/radiomics-ml/SKILL.md · Use when building or auditing a radiomics or tabular clinical-ML prediction model with a classical learner (LASSO, SVM…
git:20261003.5e119f6 · audit A · 366 stars
render-pdf-doc SKILL.md skill
aperivue/medsci-skills · skills/render-pdf-doc/SKILL.md · Use when rendering a Markdown document (English or Korean) such as a proposal, IRB cover letter, handout or reference…
git:20261026.3f4f25d · audit A · 366 stars
replicate-study SKILL.md skill
aperivue/medsci-skills · skills/replicate-study/SKILL.md · Use when applying a published cohort study's methodology to a different database. Extracts the design from the source…
git:20260930.c8ed96c · audit A · 366 stars
review-paper SKILL.md skill
aperivue/medsci-skills · skills/review-paper/SKILL.md · Use when writing a literature review article (narrative, scoping PRISMA-ScR or systematic). Scaffolds a 7-part skeleton…
git:20261002.a677d27 · audit A · 366 stars
revise SKILL.md skill
aperivue/medsci-skills · skills/revise/SKILL.md · Use when a manuscript comes back with reviewer or editor comments. Numbers every comment, classifies it…
git:20261005.3b14ae2 · audit A · 366 stars
search-lit SKILL.md skill
aperivue/medsci-skills · skills/search-lit/SKILL.md · Use when finding papers or building a reference list. Searches PubMed, Semantic Scholar and bioRxiv/medRxiv, includes…
git:20261002.8c36706 · audit A · 366 stars
self-review SKILL.md skill
aperivue/medsci-skills · skills/self-review/SKILL.md · Use when checking your own manuscript before submission from a reviewer's perspective. Returns anticipated Major/Minor…
git:20261005.b7f0eaf · audit A · 366 stars
setup-medsci SKILL.md skill
aperivue/medsci-skills · skills/setup-medsci/SKILL.md · Use when a skill fails for a missing tool or the environment needs checking. Diagnoses Python, R, Node, Claude Code…
git:20260930.c8ed96c · audit A · 366 stars
sync-submission SKILL.md skill
aperivue/medsci-skills · skills/sync-submission/SKILL.md · Use when building, auditing or freezing a journal submission package from the canonical manuscript. Detects drift…
git:20261002.318c93e · audit A · 366 stars
uncertainty-imaging SKILL.md skill
aperivue/medsci-skills · skills/uncertainty-imaging/SKILL.md · Renamed to /model-assessment in v6 (removed in v7).
git:20260930.e4f475f · audit A · 366 stars
verify-refs SKILL.md skill
aperivue/medsci-skills · skills/verify-refs/SKILL.md · Use when checking whether a manuscript's references are real. Audits each citation against PubMed and CrossRef, flags…
git:20261002.2ba4c81 · audit A · 366 stars
version-dataset SKILL.md skill
aperivue/medsci-skills · skills/version-dataset/SKILL.md · Use when you must prove an analysis ran on the intended data or lock a dataset version. Builds a deterministic…
git:20261002.b489aae · audit A · 366 stars
write-paper SKILL.md skill
aperivue/medsci-skills · skills/write-paper/SKILL.md · Use when drafting a medical research manuscript or any IMRAD section. Runs an 8-phase pipeline from outline to…
git:20261016.e6f0589 · audit A · 366 stars
write-protocol SKILL.md skill
aperivue/medsci-skills · skills/write-protocol/SKILL.md · Use when drafting an IRB or ethics research protocol. Writes Background, Study Design, Sample Size and Statistical Plan…
git:20260930.c8ed96c · audit A · 366 stars
self-review SKILL.md skill
aperivue/medsci-skills · tests/fixtures/phase_budget/real_defect/self-review/SKILL.md
git:20260724.61dfbad · audit C · 366 stars