k-dense-ai/scientific-agent-skills · skills/paperclip/SKILL.md

paperclip skillB

paperclip is agent-read markdown (skill) from k-dense-ai/scientific-agent-skills: Search and read full-text biomedical papers, FDA/PMDA/EMA regulatory documents, clinical trial registries, and UniProt/PDB/ChEMBL entries with the Paperclip CLI from GXL. Covers installing and authenticating the `paperclip` binary with a PAPERCLIP_API_KEY, the read-only virtual filesystem under /papers, /fda, /trials, /proteins and /clipboard, source-scoped semantic search, corpus-wide grep, metadata lookup and SQL, map/reduce reading across many papers, figure vision analysis, opt-in paper repo.

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add k-dense-ai/scientific-agent-skills/paperclip@v1.3
Exact content
mdr add k-dense-ai/scientific-agent-skills/paperclip@sha256:ea7d7ad27f0d9d87

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_bbtlgkqlpqna7mpr.svg)](https://markdownregistry.com/a/art_bbtlgkqlpqna7mpr)

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Versions

versioncommittedcommitsizeaudit
v1.3 latest2026-09-02 1e5eeff 22,657 BB view · diff
v1.22026-07-31 4226ca8 21,699 BB view · diff
v1.12026-07-31 bd99c01 21,699 BB view · diff
v1.12026-07-28 d33b267 21,703 BB view

Audit of the latest version

B  16 of 17 checks passed. Deterministic, no model, same answer every run.
  • fail: No curl or wget piped into a shell (matched: curl -fsSL https://paperclip.gxl.ai/install.sh | bash)
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (22657 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

k-dense-ai/scientific-agent-skills · 43,331 stars · license MIT · pushed 2026-09-02 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_bbtlgkqlpqna7mpr
GET https://markdownregistry.com/api/v1/resolve?ref=k-dense-ai/scientific-agent-skills/paperclip
GET https://markdownregistry.com/api/v1/blob/ea7d7ad27f0d9d871b9ed83238c38f45259d51cc49df720831af1f49e1aa5b05