pytdc SKILL.md skillA
pytdc from k-dense-ai/scientific-agent-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add k-dense-ai/scientific-agent-skills/pytdc@v1.4Pins v1.4 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- k-dense-ai/scientific-agent-skills
- Path
skills/pytdc/SKILL.md- Versions recorded
- 7
- Latest version
- v1.4, committed Oct 1, 2026
- First version recorded
- May 27, 2026
- Size
- 14,674 bytes
- Repository stars
- 56,497
- License
- MIT
Provides Therapeutics Data Commons workflows through PyTDC for registry discovery, dataset access, task-aware splits, evaluator metrics, benchmark groups, and bounded molecular-oracle scoring. Use when working with TDC therapeutic ML datasets or benchmarks.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# PyTDC (Therapeutics Data Commons) Use the official `PyTDC` distribution (`import tdc`) to discover therapeutic ML tasks, load approved datasets, apply task-appropriate splits, evaluate predictions, and work with curated benchmark groups. Prefer package metadata over copied dataset lists, and plan network/storage effects before constructing any loader. ## Verified snapshot - Research date: **2026-10-01** - PyPI stable: **PyTDC 1.1.15**, released 2025-03-31 - Package/source repository: `mims-harvard/TDC` - Code license: MIT - PyPI supplies only a source distribution and declares no `Requires-Python` - The dependency graph makes **CPython 3.11** the reproducible target used here: `cellxgene-census==1.15.0` excludes Python 3.12, and PyTDC's constrained RDKit release has no CPython 3.13 wheel - PyTDC imports deprecated `pkg_resources` at runtime. Setuptools 82 removed that module; pin the verified compatibility release **setuptools 80.9.0**. - `tdc.readthedocs.io` still identifies itself as TDC 0.4.1; use it as API cross-reference, not as release-version evidence - Upstream publishes no GitHub tags/releases or maintained changelog. Treat …
Read the whole file at its exact version.
How to install
mdr add k-dense-ai/scientific-agent-skills/pytdc@sha256:b7df3f50c1c618a4The line at the top of this page pins the label v1.4, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_bfixbmry7bj3cge4)
4 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 7 versions of this file, between May 27, 2026 and Oct 1, 2026, about one every 21 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| v1.4 latest | 2026-10-01 | a92663a | 14,674 B | A | view · diff |
| v1.3 | 2026-09-30 | ce9e6e9 | 13,710 B | A | view · diff |
| v1.2 | 2026-09-02 | 1e5eeff | 13,344 B | A | view · diff |
| v1.1 | 2026-07-26 | b085e11 | 12,386 B | A | view · diff |
| v1.1 | 2026-07-23 | 825f800 | 12,389 B | A | view · diff |
| git:20260611.1b8fae3 | 2026-06-11 | 1b8fae3 | 12,720 B | A | view · diff |
| v1.0 | 2026-05-27 | 0936740 | 12,715 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (14674 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
k-dense-ai/scientific-agent-skills · 56,497 stars · license MIT · pushed 2026-11-02 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_bfixbmry7bj3cge4 GET https://markdownregistry.com/api/v1/resolve?ref=k-dense-ai/scientific-agent-skills/pytdc GET https://markdownregistry.com/api/v1/blob/b7df3f50c1c618a47a81e994b2863ddd8adf695e795aa495c3a8fef5e78a0493
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.