k-dense-ai/scientific-agent-skills · skills/neuropixels-analysis/SKILL.md

neuropixels-analysis skillA

neuropixels-analysis is agent-read markdown (skill) from k-dense-ai/scientific-agent-skills: Analyze Neuropixels extracellular recordings end-to-end with SpikeInterface. Covers loading SpikeGLX/Open Ephys/NWB data, preprocessing, drift/motion correction, Kilosort4 (and CPU) spike sorting, quality metrics, and unit curation (threshold-based, model-based UnitRefine, and AI-assisted visual review). Use when working with Neuropixels 1.0/2.0 recordings, spike sorting, or extracellular electrophysiology analysis..

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add k-dense-ai/scientific-agent-skills/neuropixels-analysis@v2.4
Exact content
mdr add k-dense-ai/scientific-agent-skills/neuropixels-analysis@sha256:3eadefe63c2724f5

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_hpb6uilzlyiggc6r.svg)](https://markdownregistry.com/a/art_hpb6uilzlyiggc6r)

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Versions

versioncommittedcommitsizeaudit
v2.4 latest2026-09-02 1e5eeff 17,004 BA view · diff
v2.32026-07-31 4226ca8 16,046 BA view · diff
v2.22026-07-28 4fb7e0b 16,046 BA view · diff
v2.12026-07-26 b085e11 16,046 BA view · diff
git:20260611.c1150bd2026-06-11 c1150bd 16,196 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (17004 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

k-dense-ai/scientific-agent-skills · 43,331 stars · license MIT · pushed 2026-09-02 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_hpb6uilzlyiggc6r
GET https://markdownregistry.com/api/v1/resolve?ref=k-dense-ai/scientific-agent-skills/neuropixels-analysis
GET https://markdownregistry.com/api/v1/blob/3eadefe63c2724f5be4e981e07d818a9c9f8daada26ed3e587feeb5e9455b6fb