gget SKILL.md skillA
gget from k-dense-ai/scientific-agent-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add k-dense-ai/scientific-agent-skills/gget@v1.7Pins v1.7 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- k-dense-ai/scientific-agent-skills
- Path
skills/gget/SKILL.md- Versions recorded
- 7
- Latest version
- v1.7, committed Oct 1, 2026
- First version recorded
- Jul 26, 2026
- Size
- 11,253 bytes
- Repository stars
- 56,497
- License
- MIT
Queries 20+ bioinformatics resources through CLI/Python. Supports quick lookups of gene info, BLAST/BLAT, viral sequence downloads, PDB/mmCIF structures, G2P residue annotations, enrichment analysis, OpenTargets, COSMIC, CELLxGENE, and 8cube mouse specificity/expression data. Best for interactive exploration and simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# gget ## Overview gget is a command-line bioinformatics tool and Python package providing unified access to 20+ genomic databases and analysis methods. Query gene information, sequence analysis, protein structures, viral sequences, expression data, disease associations, and mouse tissue/cell specificity metrics through a consistent interface. Most gget modules work both as command-line tools and as Python functions. **Important**: The databases queried by gget are continuously updated, which sometimes changes their structure. Guidance here targets gget 0.30.8 (reviewed 2026-09-30). For reproducible work, pin `gget==0.30.8`; for broken upstream database adapters, update gget after checking release notes. ## Installation Install gget in a clean virtual environment to avoid conflicts: ```bash # Reproducible install targeting this skill uv venv --python 3.13 .venv source .venv/bin/activate uv pip install "gget==0.30.8" ``` ```python import gget ``` ## Quick Start Inspect module-specific syntax before querying: ```bash gget info --help gget pdb --help ``` Most modules return: - **Command-line**: JSON (default) or CSV with `-csv` flag - **Python**: DataFrame or dictionary …
Read the whole file at its exact version.
How to install
mdr add k-dense-ai/scientific-agent-skills/gget@sha256:55027a94be8dde01The line at the top of this page pins the label v1.7, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_m76ejpxjluf3yyxw)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 7 versions of this file, between Jul 26, 2026 and Oct 1, 2026, about one every 11 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| v1.7 latest | 2026-10-01 | a92663a | 11,253 B | A | view · diff |
| v1.6 | 2026-09-30 | ce9e6e9 | 8,893 B | A | view · diff |
| v1.5 | 2026-09-02 | 1e5eeff | 8,401 B | A | view · diff |
| v1.4 | 2026-07-31 | 4226ca8 | 7,443 B | A | view · diff |
| v1.3 | 2026-07-28 | 4fb7e0b | 7,443 B | A | view · diff |
| v1.2 | 2026-07-26 | 2f2022d | 7,443 B | A | view · diff |
| v1.1 | 2026-07-26 | b085e11 | 31,853 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (11253 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
k-dense-ai/scientific-agent-skills · 56,497 stars · license MIT · pushed 2026-11-02 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_m76ejpxjluf3yyxw GET https://markdownregistry.com/api/v1/resolve?ref=k-dense-ai/scientific-agent-skills/gget GET https://markdownregistry.com/api/v1/blob/55027a94be8dde013fd17e563ba20ccba92b7131c29c21e9c83e54fbce2b348a
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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