bio-uniprot-access SKILL.md skillA
bio-uniprot-access from pku-yuangroup/openai4s is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add pku-yuangroup/openai4s/bio-uniprot-access@git:20260821.2d1b678Pins git:20260821.2d1b678 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- pku-yuangroup/openai4s
- Path
skills/bioskills/bio-database-access-uniprot-access/SKILL.md- Versions recorded
- 1
- Latest version
- git:20260821.2d1b678, committed Aug 21, 2026
- Size
- 19,108 bytes
- Repository stars
- 662
- License
- MIT
Query UniProt's REST API (post-2022 endpoint at rest.uniprot.org) for protein sequences, annotations, GO terms, cross-references, ID mappings, and proteomes. Use when fetching UniProtKB entries, navigating the JSON schema, choosing between UniProtKB/UniRef/UniParc/Proteomes resources, deciding stream vs search endpoint for batch retrieval, running ID-mapping jobs with the async pattern, handling isoform suffixes, or filtering reviewed Swiss-Prot vs auto-annotated TrEMBL. Encodes the legacy URL…
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
## Version Compatibility Reference examples tested with: requests 2.31+, pandas 2.2+; UniProt REST API as of 2024_06 release Before using code patterns, verify installed versions match. If versions differ: - Python: `pip show requests pandas` - API surface: confirm endpoint URLs match https://www.uniprot.org/help/api The REST API JSON schema is stable within a release; major schema changes are documented at https://www.uniprot.org/release-notes. The 2022 migration broke the legacy `https://www.uniprot.org/uniprot/...` endpoints. # UniProt Access **"Get protein information from UniProt"** -> Two facts dominate every UniProt workflow in 2026: (1) **the API endpoint migrated in 2022** from `https://www.uniprot.org/uniprot/...` to `https://rest.uniprot.org/uniprotkb/...` with a substantially different JSON schema; pre-2022 code does not work as-is. (2) **`?fields=`** is essential — default JSON returns the full entry (~20-30 KB each); for bulk pulls, request only the fields actually needed. The major databases under the UniProt umbrella have different scopes: …
Read the whole file at its exact version.
How to install
mdr add pku-yuangroup/openai4s/bio-uniprot-access@sha256:f37bfdd5b000105eThe line at the top of this page pins the label git:20260821.2d1b678, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_o5ham5kfnqcwwj7a)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 1 version of this file, committed on Aug 21, 2026.
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (19108 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
pku-yuangroup/openai4s · 662 stars · license MIT · pushed 2026-11-03 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_o5ham5kfnqcwwj7a GET https://markdownregistry.com/api/v1/resolve?ref=pku-yuangroup/openai4s/bio-uniprot-access GET https://markdownregistry.com/api/v1/blob/f37bfdd5b000105ec8df1b922f5ba11a805569c98344415a08a6dbe3e2c4031d
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.