pathml SKILL.md skillA
pathml from k-dense-ai/scientific-agent-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add k-dense-ai/scientific-agent-skills/pathml@v1.4Pins v1.4 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- k-dense-ai/scientific-agent-skills
- Path
skills/pathml/SKILL.md- Versions recorded
- 7
- Latest version
- v1.4, committed Oct 1, 2026
- First version recorded
- May 27, 2026
- Size
- 13,103 bytes
- Repository stars
- 53,159
- License
- MIT
Supports local computational pathology research with PathML: slide loading and tiling, preprocessing and QC, h5path storage, multiplex quantification, spatial graphs, and bounded model inference. Use for whole-slide H&E, CODEX, Vectra, Mesmer, HoVer-Net, and HACTNet workflows.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# PathML ## Scope and safety boundary Use PathML for **local computational pathology research**. It is beta research software, not a validated medical device, diagnostic system, clinical decision support tool, or substitute for a pathologist. Do not use outputs to diagnose, grade, stage, or treat a patient. Pathology files may contain faces, labels, accession numbers, patient identifiers, DICOM tags, filenames, or linked clinical data. Before processing: 1. Confirm authorization, consent/waiver, data-use terms, and institutional policy. 2. De-identify pixels and metadata; keep the re-identification key outside the analysis workspace. 3. Use pseudonymous `patient_id`, `slide_id`, and `specimen_id` values. Do not put direct identifiers in filenames, logs, `.h5path` labels, model cards, or reports. 4. Keep inputs, intermediates, and outputs on approved local encrypted storage. 5. Split by patient (then slide) before tiling or fitting any preprocessing step. ## Version baseline, reviewed 2026-10-01 - **Published stable release:** PyPI `pathml==3.0.8`, published 2026-08-14, source tag `v3.0.8` (`fa49ffb66757ed8a8265756c92b6290834eddecb`). …
Read the whole file at its exact version.
How to install
mdr add k-dense-ai/scientific-agent-skills/pathml@sha256:654cef910bd56768The line at the top of this page pins the label v1.4, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_p7lrikwlt4xtj64h)
3 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 7 versions of this file, between May 27, 2026 and Oct 1, 2026, about one every 21 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| v1.4 latest | 2026-10-01 | a92663a | 13,103 B | A | view · diff |
| v1.3 | 2026-09-30 | ce9e6e9 | 11,601 B | A | view · diff |
| v1.2 | 2026-09-02 | 1e5eeff | 11,160 B | A | view · diff |
| v1.1 | 2026-07-26 | b085e11 | 10,202 B | A | view · diff |
| v1.1 | 2026-07-23 | 191e153 | 10,206 B | A | view · diff |
| git:20260611.1b8fae3 | 2026-06-11 | 1b8fae3 | 7,387 B | A | view · diff |
| v1.0 | 2026-05-27 | 0936740 | 7,382 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (13103 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
k-dense-ai/scientific-agent-skills · 53,159 stars · license MIT · pushed 2026-10-19 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_p7lrikwlt4xtj64h GET https://markdownregistry.com/api/v1/resolve?ref=k-dense-ai/scientific-agent-skills/pathml GET https://markdownregistry.com/api/v1/blob/654cef910bd567689b854eab52176628f39184d7cca7a6bf405343f337e58538
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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