imaging-data-commons SKILL.md skillA

imaging-data-commons from k-dense-ai/scientific-agent-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.

Install it, pinned
mdr add k-dense-ai/scientific-agent-skills/imaging-data-commons@v1.8

Pins v1.8 in mdr.lock. Pin the fingerprint instead.

Audit grade
A, 17 of 17 checks passed
Kind
SKILL.md skill
Repository
k-dense-ai/scientific-agent-skills
Path
skills/imaging-data-commons/SKILL.md
Versions recorded
8
Latest version
v1.8, committed Oct 1, 2026
First version recorded
Jul 26, 2026
Size
31,452 bytes
Repository stars
56,497
License
MIT

Queries and downloads public cancer imaging data from NCI Imaging Data Commons. Supports IDC collection discovery, DICOM access, radiology (CT, MR, PET) and pathology AI datasets, metadata SQL, visualization, licensing, and citations. Uses public metadata and download routes without authentication; optional BigQuery and Google Healthcare routes require Google credentials.

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# Imaging Data Commons

## Overview

Query and download public cancer imaging data from the National Cancer Institute Imaging Data Commons (IDC). No authentication required for data access.

**Expected network access:** IDC metadata is reachable three ways — a bundled local DuckDB index (offline after installation; additional indices are fetched from GitHub and clinical tables from S3), or the hosted IDC service over MCP or REST (`api.imaging.datacommons.cancer.gov`, no authentication). File downloads use public GCS (`storage.googleapis.com`) and AWS S3 (`s3.amazonaws.com`) — no authentication required. DICOMweb access uses either the public IDC proxy (`proxy.imaging.datacommons.cancer.gov`, no auth) or the Google Cloud Healthcare API (`healthcare.googleapis.com`, requires GCP authentication). Optional BigQuery queries (`bigquery.googleapis.com`) also require GCP authentication. Citation resolution contacts DOI services. Public IDC routes require no credentials; optional Google clients use Application Default Credentials.

**Reviewed 2026-09-30:** idc-index 0.12.5, idc-index-data 24.2.2, IDC v24; hosted API 3.0.0b3. Recheck at use time.
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint
mdr add k-dense-ai/scientific-agent-skills/imaging-data-commons@sha256:8dd250a80dc6959f

The line at the top of this page pins the label v1.8, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_pbcjnlhouw7pko5u.svg)](https://markdownregistry.com/a/art_pbcjnlhouw7pko5u)

4 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 8 versions of this file, between Jul 26, 2026 and Oct 1, 2026, about one every 10 days.

versioncommittedcommitsizeaudit
v1.8 latest2026-10-01 a92663a 31,452 BA view · diff
v1.72026-09-30 a0aea74 30,581 BA view · diff
v1.62026-09-30 ce9e6e9 30,581 BA view · diff
v1.52026-08-10 aaf763c 30,399 BA view · diff
v1.42026-07-31 4226ca8 23,173 BA view · diff
v1.32026-07-28 0e45106 23,173 BA view · diff
v1.22026-07-26 2f2022d 22,403 BA view · diff
v1.12026-07-26 b085e11 37,260 BA view

Audit of the latest version

A  17 of 17 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (31452 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

k-dense-ai/scientific-agent-skills · 56,497 stars · license MIT · pushed 2026-11-02 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_pbcjnlhouw7pko5u
GET https://markdownregistry.com/api/v1/resolve?ref=k-dense-ai/scientific-agent-skills/imaging-data-commons
GET https://markdownregistry.com/api/v1/blob/8dd250a80dc6959fcebc9cbae8049b25a83be31647c597f17a9e674c4f2e3685

Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.

More from k-dense-ai/scientific-agent-skills

AGENTS.md AGENTS.md file
k-dense-ai/scientific-agent-skills · AGENTS.md
git:20261001.f7a50ed · audit A · 56,497 stars
13c-metabolic-flux SKILL.md skill
k-dense-ai/scientific-agent-skills · skills/13c-metabolic-flux/SKILL.md · Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom…
v1.2 · audit A · 56,497 stars
adaptyv SKILL.md skill
k-dense-ai/scientific-agent-skills · skills/adaptyv/SKILL.md · Uses the Adaptyv Bio Foundry API and Python SDK to design protein characterization experiments, estimate costs, submit…
v1.5 · audit A · 56,497 stars
aeon SKILL.md skill
k-dense-ai/scientific-agent-skills · skills/aeon/SKILL.md · This skill should be used for time series machine learning tasks including classification, regression, clustering…
v1.3 · audit A · 56,497 stars
alphagenome SKILL.md skill
k-dense-ai/scientific-agent-skills · skills/alphagenome/SKILL.md · Looks up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18…
v1.2 · audit A · 56,497 stars
analytical-method-validation SKILL.md skill
k-dense-ai/scientific-agent-skills · skills/analytical-method-validation/SKILL.md · Plans, executes, and documents validation, verification, and transfer of analytical procedures under the governing…
v2.0 · audit A · 56,497 stars
anndata SKILL.md skill
k-dense-ai/scientific-agent-skills · skills/anndata/SKILL.md · Handles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem…
v1.4 · audit A · 56,497 stars
arbor SKILL.md skill
k-dense-ai/scientific-agent-skills · skills/arbor/SKILL.md · Applies Arbor Hypothesis Tree Refinement to research artifacts with repeatable evaluators, including model training…
v1.6 · audit A · 56,497 stars
arboreto SKILL.md skill
k-dense-ai/scientific-agent-skills · skills/arboreto/SKILL.md · Infers candidate gene regulatory networks from bulk or single-cell expression data using AertsLab Arboreto GRNBoost2…
v1.3 · audit A · 56,497 stars
astropy SKILL.md skill
k-dense-ai/scientific-agent-skills · skills/astropy/SKILL.md · Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities…
v1.5 · audit A · 56,497 stars
autoskill SKILL.md skill
k-dense-ai/scientific-agent-skills · skills/autoskill/SKILL.md · Analyzes user-requested Screenpipe history windows to detect repeated research workflows, match existing scientific…
v1.6 · audit A · 56,497 stars
benchling-integration SKILL.md skill
k-dense-ai/scientific-agent-skills · skills/benchling-integration/SKILL.md · Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps…
v1.7 · audit A · 56,497 stars

Every file in k-dense-ai/scientific-agent-skills

Other files named imaging-data-commons

imaging-data-commons SKILL.md skill
foryourhealth111-pixel/vibe-skills · bundled/skills/imaging-data-commons/SKILL.md · Query and download public cancer imaging data from NCI Imaging Data Commons using idc-index. Use for accessing…
v1.3.1 · audit A · 3,805 stars
imaging-data-commons SKILL.md skill
jaechang-hits/sciagent-skills · skills/medical-imaging/imaging-data-commons/SKILL.md · Query and download NCI Imaging Data Commons (IDC) cancer radiology and pathology datasets via the idc-index Python…
git:20260528.a140b59 · audit A · 386 stars

Browse by kind, by grade A, or by owner.