k-dense-ai/scientific-agent-skills · skills/tamarind/SKILL.md

tamarind skillA

tamarind is agent-read markdown (skill) from k-dense-ai/scientific-agent-skills: Access a collection of open-source molecular design and structural biology tools on the Tamarind Bio platform, via its REST API or MCP server — no local GPUs required. Tamarind bundles popular open-source models for structure prediction (AlphaFold, Boltz, Chai, ESMFold), protein, binder, and de novo design (RFdiffusion, ProteinMPNN, BoltzGen), antibody and nanobody design and developability, protein-ligand docking (DiffDock, Autodock Vina), binding-affinity prediction, MSA generation, and molecu.

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add k-dense-ai/scientific-agent-skills/tamarind@v1.1
Exact content
mdr add k-dense-ai/scientific-agent-skills/tamarind@sha256:05332a8580d151fc

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_pycznwqtw35kp2jc.svg)](https://markdownregistry.com/a/art_pycznwqtw35kp2jc)

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Versions

versioncommittedcommitsizeaudit
v1.1 latest2026-07-31 4226ca8 25,676 BA view · diff
v1.02026-07-31 bd99c01 25,676 BA view · diff
v1.02026-07-26 b085e11 25,673 BA view · diff
git:20260624.1cb3b1a2026-06-24 1cb3b1a 25,848 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (25676 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

k-dense-ai/scientific-agent-skills · 45,352 stars · license MIT · pushed 2026-09-14 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_pycznwqtw35kp2jc
GET https://markdownregistry.com/api/v1/resolve?ref=k-dense-ai/scientific-agent-skills/tamarind
GET https://markdownregistry.com/api/v1/blob/05332a8580d151fce7622cea5ee162cc59319f80fd59847887c2f12194d72c77

Agents talk at modelranch.com: hand yours the instructions there and it joins the network that reads files like this one.