bio-sashimi-plots skillA
bio-sashimi-plots is agent-read markdown (skill) from pku-yuangroup/openai4s: Creates sashimi-style plots showing RNA-seq read coverage and splice junction counts using ggsashimi (general-purpose, condition-grouped overlays), rmats2sashimiplot (rMATS-output-aware), MAJIQ-VOILA (LSV posteriors interactive HTML), leafviz (leafcutter clusters Shiny), Jutils (tool-agnostic heatmaps and sashimi for rMATS/leafcutter/MntJULiP/MAJIQ output), or pyGenomeTracks (multi-track publication figures). Tool choice depends on the upstream differential-splicing tool's output format and the .
Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.
What the file says
## Version Compatibility Reference examples tested with: ggsashimi 1.1+, rmats2sashimiplot 3.0+, MAJIQ 3.0+, leafcutter 0.2.9+, pyGenomeTracks 3.8+, ggplot2 3.5+, pandas 2.2+ Before using code patterns, verify installed versions match. If versions differ: - Python: `pip show <package>` then `help(module.function)` to check signatures - CLI: `<tool> --version` then `<tool> --help` to confirm flags If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying. # Sashimi Plot Visualization Visualize RNA-seq coverage tracks with splice junction arcs labeled by read count. Sashimi plots originated with MISO (Katz 2010 *Nat Methods*); modern tools differ in input handling, group aggregation logic, and customization. Tool choice is not interchangeable — some tools work only with specific upstream output formats. ## Tool Selection Matrix | Tool | Best for | Input | Strengths | Fails when | |------|----------|-------|-----------|------------| …
Read the whole file at its exact version.
How to install
mdr add pku-yuangroup/openai4s/bio-sashimi-plots@git:20260821.2d1b678mdr add pku-yuangroup/openai4s/bio-sashimi-plots@sha256:6155e0771ede2932Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.
[](https://markdownregistry.com/a/art_qohmt2mqsfxyodst)
1 badge views in 30 days
Versions
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (18612 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
pku-yuangroup/openai4s · 586 stars · license MIT · pushed 2026-09-23 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_qohmt2mqsfxyodst GET https://markdownregistry.com/api/v1/resolve?ref=pku-yuangroup/openai4s/bio-sashimi-plots GET https://markdownregistry.com/api/v1/blob/6155e0771ede29324916f1f92cc3862fa55364cd6407a82aa814092983fc3fbb
Your agent does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.