omero-integration SKILL.md skillA
omero-integration from k-dense-ai/scientific-agent-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add k-dense-ai/scientific-agent-skills/omero-integration@v1.6Pins v1.6 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- k-dense-ai/scientific-agent-skills
- Path
skills/omero-integration/SKILL.md- Versions recorded
- 7
- Latest version
- v1.6, committed Oct 1, 2026
- First version recorded
- Jun 11, 2026
- Size
- 11,142 bytes
- Repository stars
- 53,159
- License
- MIT
Inspects and automates microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering, and documented OMERO.web APIs. Use this skill for scoped OMERO inventory, metadata export, import/export planning, or reviewed write workflows.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# OMERO Integration Use current OME documentation and the smallest explicit data scope. OMERO data may contain unpublished images, identifiers, annotations, original files, and derived measurements. ## Verified Baseline This skill was refreshed on **2026-09-30**: - **OMERO.server 5.6.18** (May 2026) is the current documented stable server. - It was tested by OME with **OMERO.py/omero-py 5.22.1** and **OMERO.web 5.31.0**. - `omero-py==5.22.1` requires Python 3.10 or newer. The OMERO support matrix supports 3.10 and 3.11, recommends 3.12, and still labels 3.13/3.14 “upcoming.” - OMERO 5.6 uses **IcePy 3.6**, with 3.6.5 prebuilt client wheels documented for Python versions through 3.12. **Latest client releases:** OMERO.py **5.23.0** (2026-07-30) and OMERO.web **5.33.2** are newer than the server history’s tested pairing. The bundled helpers were checked locally with OMERO.py 5.22.1 and 5.23.0, IcePy 3.6.5, and Python 3.12; this did not connect to an OMERO server. Remote snippets in this skill and its references are illustrative, verified against official docs/source, and require adaptation to an authorized server and its object IDs. …
Read the whole file at its exact version.
How to install
mdr add k-dense-ai/scientific-agent-skills/omero-integration@sha256:c75e73ba447bbf95The line at the top of this page pins the label v1.6, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_qqb7dpru5acqp6nd)
5 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 7 versions of this file, between Jun 11, 2026 and Oct 1, 2026, about one every 19 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| v1.6 latest | 2026-10-01 | a92663a | 11,142 B | A | view · diff |
| v1.5 | 2026-09-30 | ce9e6e9 | 10,646 B | A | view · diff |
| v1.4 | 2026-09-02 | 1e5eeff | 10,233 B | A | view · diff |
| v1.3 | 2026-07-26 | 2f2022d | 9,275 B | A | view · diff |
| v1.2 | 2026-07-23 | 90e825e | 9,275 B | A | view · diff |
| git:20260611.c1150bd | 2026-06-11 | c1150bd | 8,850 B | A | view · diff |
| git:20260611.fe3f715 | 2026-06-11 | fe3f715 | 8,425 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (11142 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
k-dense-ai/scientific-agent-skills · 53,159 stars · license MIT · pushed 2026-10-19 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_qqb7dpru5acqp6nd GET https://markdownregistry.com/api/v1/resolve?ref=k-dense-ai/scientific-agent-skills/omero-integration GET https://markdownregistry.com/api/v1/blob/c75e73ba447bbf9530f6d3df4ba6224185f3c7728460b37938c8626dab664ad2
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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