geniml SKILL.md skillA
geniml from k-dense-ai/scientific-agent-skills is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.
mdr add k-dense-ai/scientific-agent-skills/geniml@v1.4Pins v1.4 in mdr.lock. Pin the fingerprint instead.
- Audit grade
- A, 17 of 17 checks passed
- Kind
- SKILL.md skill
- Repository
- k-dense-ai/scientific-agent-skills
- Path
skills/geniml/SKILL.md- Versions recorded
- 7
- Latest version
- v1.4, committed Oct 1, 2026
- First version recorded
- May 27, 2026
- Size
- 16,157 bytes
- Repository stars
- 53,159
- License
- MIT
Supports audited local Geniml genomic-interval workflows: validate BED and universe contracts, plan Region2Vec or scEmbed runs, inspect model/tokenizer compatibility, and assess consensus universes.
Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.
What the file says
# Geniml Use Geniml for machine learning and statistical workflows over genomic interval sets. Treat coordinates, assemblies, token vocabularies, model artifacts, and sample grouping as explicit contracts. The bundled scripts validate or plan; they do not import Geniml, contact services, deserialize models, or execute training. `Bash` is declared only for explicit, user-approved `uv`, Python, Geniml, Gtars, Git, and native CLI commands shown in this guide; bundled Python helpers do not spawn subprocesses. Example paths under `data/`, `refs/`, `work/`, and `models/` are user-provided project placeholders, not missing bundled files. ## Verified release snapshot - Latest stable PyPI release on 2026-10-01: `geniml==0.8.4` (2026-01-14). - PyPI does not declare `Requires-Python`; its classifiers list Python 3.10-3.14. The current recipes below were tested on Python 3.12. - `geniml==0.8.4` accepts `gtars>=0.2.5`; the verified base smoke used current `gtars==0.10.0` (2026-09-05, Python >=3.10). - Extras are `ml` and `test`. The base install omits Torch, Gensim, Scanpy, Hugging Face Hub, pyBigWig, and HMM dependencies. …
Read the whole file at its exact version.
How to install
mdr add k-dense-ai/scientific-agent-skills/geniml@sha256:7fb9ad57657b2fdaThe line at the top of this page pins the label v1.4, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.
[](https://markdownregistry.com/a/art_rgqovtve3djvfph6)
4 badge image fetches in 30 days. What the badge shows.
Versions
The registry has recorded 7 versions of this file, between May 27, 2026 and Oct 1, 2026, about one every 21 days.
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| v1.4 latest | 2026-10-01 | a92663a | 16,157 B | A | view · diff |
| v1.3 | 2026-09-30 | ce9e6e9 | 14,348 B | A | view · diff |
| v1.2 | 2026-09-02 | 1e5eeff | 13,897 B | A | view · diff |
| v1.1 | 2026-07-26 | b085e11 | 12,939 B | A | view · diff |
| v1.1 | 2026-07-24 | dd952bd | 12,959 B | A | view · diff |
| git:20260611.1b8fae3 | 2026-06-11 | 1b8fae3 | 10,103 B | A | view · diff |
| v1.0 | 2026-05-27 | 0936740 | 10,098 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (16157 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
k-dense-ai/scientific-agent-skills · 53,159 stars · license MIT · pushed 2026-10-19 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_rgqovtve3djvfph6 GET https://markdownregistry.com/api/v1/resolve?ref=k-dense-ai/scientific-agent-skills/geniml GET https://markdownregistry.com/api/v1/blob/7fb9ad57657b2fda7dbc3f234af5dab47915953c6678fbc066c9086c83eadd21
Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.
Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.
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