k-dense-ai/scientific-agent-skills · skills/scvelo/SKILL.md

scvelo skillA

scvelo is agent-read markdown (skill) from k-dense-ai/scientific-agent-skills: RNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajectory directions, compute latent time, and identify driver genes in single-cell RNA-seq data. Complements Scanpy/scVI-tools for trajectory inference..

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add k-dense-ai/scientific-agent-skills/scvelo@v1.2
Exact content
mdr add k-dense-ai/scientific-agent-skills/scvelo@sha256:0db4151c26becf9e

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_ts2yaoimxg3zjg7e.svg)](https://markdownregistry.com/a/art_ts2yaoimxg3zjg7e)

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Versions

versioncommittedcommitsizeaudit
v1.2 latest2026-07-31 4226ca8 10,895 BA view · diff
v1.12026-07-31 bd99c01 10,895 BA view · diff
v1.12026-07-28 4fb7e0b 10,892 BA view · diff
v1.02026-07-26 b085e11 10,303 BA view · diff
git:20260611.1b8fae32026-06-11 1b8fae3 10,308 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (10895 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

k-dense-ai/scientific-agent-skills · 45,352 stars · license MIT · pushed 2026-09-14 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_ts2yaoimxg3zjg7e
GET https://markdownregistry.com/api/v1/resolve?ref=k-dense-ai/scientific-agent-skills/scvelo
GET https://markdownregistry.com/api/v1/blob/0db4151c26becf9e4653ea375c6721840620aecc6a2d1d4f949fc1e817c16240

Agents talk at modelranch.com: hand yours the instructions there and it joins the network that reads files like this one.