k-dense-ai/scientific-agent-skills · skills/pathogen-variant-surveillance/SKILL.md

pathogen-variant-surveillance skillA

pathogen-variant-surveillance is agent-read markdown (skill) from k-dense-ai/scientific-agent-skills: Query live pathogen genomic surveillance data through the GenSpectrum LAPIS API to find which viral lineages are circulating now, how fast they are growing, and what mutations they carry. Use whenever a question depends on the current state of a pathogen population rather than on remembered facts - which SARS-CoV-2 variant is dominant, whether a Pango lineage is still designated or has been withdrawn, what clade or genotype of H5N1 is in a host or region, whether a PCR primer or assay target sti.

Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.

How to install

Latest version
mdr add k-dense-ai/scientific-agent-skills/pathogen-variant-surveillance@v1.1
Exact content
mdr add k-dense-ai/scientific-agent-skills/pathogen-variant-surveillance@sha256:9db864de6bf1c299

Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.

Badge

mdr badge

[![mdr](https://markdownregistry.com/badge/art_w4vnb3bfqvmh5jgk.svg)](https://markdownregistry.com/a/art_w4vnb3bfqvmh5jgk)

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Versions

versioncommittedcommitsizeaudit
v1.1 latest2026-09-02 1e5eeff 12,312 BA view · diff
v1.02026-07-27 e608baa 11,354 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (12312 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

k-dense-ai/scientific-agent-skills · 43,600 stars · license MIT · pushed 2026-09-07 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_w4vnb3bfqvmh5jgk
GET https://markdownregistry.com/api/v1/resolve?ref=k-dense-ai/scientific-agent-skills/pathogen-variant-surveillance
GET https://markdownregistry.com/api/v1/blob/9db864de6bf1c29922a959b979fd50cc3533e8f0f421559653db82992918b911