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aomic-skill skillA

aomic-skill is agent-read markdown (skill) from cuhk-aim-group/neurodiscovery: Use this skill whenever the user wants an end-to-end workflow for the AOMIC (Amsterdam Open MRI Collection) dataset, including data access, BIDS organization, and multimodal processing of sMRI, rs-fMRI, and task-fMRI. Triggers include: 'AOMIC', 'AOMIC data', 'process AOMIC', 'AOMIC fMRI', 'AOMIC resting state', or any request to run the AOMIC multimodal pipeline. This is the NeuroClaw dataset-orchestration layer for AOMIC..

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What the file says

# AOMIC Skill (Dataset-Orchestration Layer)

## Overview
`aomic-skill` is the NeuroClaw orchestration skill for the **AOMIC (Amsterdam Open MRI Collection)** dataset.

It coordinates a fixed three-phase workflow:
1. Guide AOMIC data access and download from OpenNeuro / the AOMIC repository.
2. Prepare and validate BIDS-style data organization for downstream processing.
3. Delegate modality pipelines to `smri-skill` and `fmri-skill`.

It also provides **phenotype extraction** and **QC integration** paths:
- Extract and merge AOMIC phenotype tables (Big Five personality traits, fluid intelligence, demographics).
- Generate per-subject QC summaries with exclusion lists.

This skill follows NeuroClaw hierarchy:
- Defines **WHAT to do**, not low-level implementation details.
- Does **not** execute direct shell commands itself.
- Delegates all execution via `claw-shell` to base/tool skills.

**Research use only.**

---

## Download Stage (Mandatory First Step)

### Source
AOMIC data is publicly available:
- Website: https://nilab-uva.github.io/AOMIC.github.io/
- OpenNeuro derivatives: https://openneuro.org/
- Data access: direct download, no authentication required for most components
…

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A  17 of 17 checks passed. Deterministic, no model, same answer every run.
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Source

GitHub

cuhk-aim-group/neurodiscovery · 91 stars · license MIT · pushed 2026-09-22 · branch main

API

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