bids-organizer skillA
bids-organizer is agent-read markdown (skill) from cuhk-aim-group/neurodiscovery: Use this skill whenever the user wants to automatically organize raw neuroimaging data (DICOM, NIfTI, EEG, etc.) into a valid BIDS (Brain Imaging Data Structure) dataset. Triggers include: 'organize to BIDS', 'BIDS organizer', 'convert to BIDS', 'BIDS conversion', 'bidsify', 'create BIDS dataset', 'raw data to BIDS', or any request to structure data according to BIDS specification..
Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.
What the file says
# BIDS Organizer (Tool Layer) ## Overview BIDS Organizer is the NeuroClaw interface-layer skill that automatically converts raw or semi-organized neuroimaging data into a standardized BIDS-compliant dataset. It supports DICOM → NIfTI conversion + BIDS naming, existing NIfTI reorganization, EEG (.set/.edf/.bdf/.fif), and basic metadata handling. The skill generates a clear execution plan, waits for user confirmation, then delegates all heavy work to appropriate base tools. **Core workflow (never bypassed):** 1. Scan input directory and detect data types (DICOM, NIfTI, EEG, etc.). 2. Generate a numbered execution plan with proposed BIDS structure and subject/session labels. 3. Present the plan, estimated time, and risks; wait for explicit confirmation (“YES” / “execute” / “proceed”). 4. On confirmation, delegate tasks to `dcm2nii`, `mne-eeg-tool`, and `claw-shell`. 5. After completion, run BIDS validation and generate a summary report. **Research use only.** ## Quick Reference | Task | What needs to be done | Delegate to which tool skill | Expected output | …
Read the whole file at its exact version.
How to install
mdr add cuhk-aim-group/neurodiscovery/bids-organizer@git:20260506.86420c0mdr add cuhk-aim-group/neurodiscovery/bids-organizer@sha256:0f061ac00025e33ePin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.
[](https://markdownregistry.com/a/art_jzypojntxzd5sho4)
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Versions
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260506.86420c0 latest | 2026-05-06 | 86420c0 | 11,096 B | A | view · diff |
| git:20260505.e9ddd22 | 2026-05-05 | e9ddd22 | 11,083 B | A | view · diff |
| git:20260430.becfb09 | 2026-04-30 | becfb09 | 11,010 B | A | view · diff |
| git:20260404.fa7f354 | 2026-04-04 | fa7f354 | 7,612 B | A | view · diff |
| git:20260328.891ed93 | 2026-03-28 | 891ed93 | 5,714 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (11096 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
cuhk-aim-group/neurodiscovery · 91 stars · license MIT · pushed 2026-09-22 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_jzypojntxzd5sho4 GET https://markdownregistry.com/api/v1/resolve?ref=cuhk-aim-group/neurodiscovery/bids-organizer GET https://markdownregistry.com/api/v1/blob/0f061ac00025e33ecac642a3be75a6dcc1583ca15325645ff18778ceb2063023
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