Home / cuhk-aim-group / neurodiscovery · skills/adni-skill/SKILL.md · GitHub

adni-skill skillA

adni-skill is agent-read markdown (skill) from cuhk-aim-group/neurodiscovery: Use this skill whenever the user wants an end-to-end workflow for ADNI or ADNI-DOD data, including controlled LONI IDA access, BIDS preparation, fMRIPrep preprocessing, and DK68 ROI processing. Trigger on ADNI, ADNI-DOD, ADNIDOD, DoD-ADNI, SCRNO, or ADNI imaging requests..

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What the file says

# ADNI Skill (Dataset-Orchestration Layer)

## Overview
`adni-skill` is the NeuroClaw orchestration skill for ADNI subject-level fMRI + T1 workflows.

It supports two distinct usage modes:
1. A narrow ADNI raw NIfTI -> BIDS staging path.
2. A full downstream ADNI workflow path (BIDS + fMRIPrep + DK68 ROI extraction).

It coordinates a fixed two-stage pipeline:
1. Prepare ADNI data into BIDS and run fMRIPrep.
2. Run DK68 ROI extraction with QC.

It also provides an **optional VQA generation path** for VLM use cases:
- Reorganize ADNI data and convert DICOM to NIfTI.
- Generate task labels (task1-task5).
- Generate VQA pairs from task outputs.

This skill follows NeuroClaw hierarchy:
- Defines **WHAT to do**, not low-level implementation details.
- Does **not** execute direct shell commands itself.
- Delegates all execution via `claw-shell` to tool skills.

**Research use only.**

---

## Access Stage

- Official route: https://adni.loni.usc.edu/data-samples/adni-data/
- ADNI is not an anonymous download. Accept the ADNI DUA and submit the LONI IDA application with institutional affiliation and proposed use. ADNI states that applications are generally reviewed within two weeks.
…

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How to install

Latest version
mdr add cuhk-aim-group/neurodiscovery/adni-skill@git:20260825.f7533a2
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Versions

versioncommittedcommitsizeaudit
git:20260825.f7533a2 latest2026-08-25 f7533a2 12,867 BA view · diff
git:20260505.e9ddd222026-05-05 e9ddd22 11,389 BA view · diff
git:20260430.becfb092026-04-30 becfb09 11,288 BA view · diff
git:20260330.1dc3c762026-03-30 1dc3c76 8,773 BA view · diff
git:20260328.cb6adcd2026-03-28 cb6adcd 5,194 BA view

Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (12867 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

cuhk-aim-group/neurodiscovery · 91 stars · license MIT · pushed 2026-09-22 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_u3qarphwdm7bc6we
GET https://markdownregistry.com/api/v1/resolve?ref=cuhk-aim-group/neurodiscovery/adni-skill
GET https://markdownregistry.com/api/v1/blob/3d85c538c11735affe1e4cff7b6a300c6f0ff68fe319e54aab022cdf9494396f

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