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abcd-skill skillA

abcd-skill is agent-read markdown (skill) from cuhk-aim-group/neurodiscovery: Use this skill whenever the user wants an end-to-end workflow for the ABCD Study dataset, including controlled access through the NIH Brain Development Cohorts (NBDC) platform, BIDS organization, and multimodal processing of sMRI, fMRI, and dMRI. Triggers include: 'ABCD Study', 'ABCD data', 'process ABCD', 'ABCD fMRI', 'ABCD sMRI', 'ABCD diffusion', or any request to run the ABCD multimodal pipeline..

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What the file says

# ABCD Skill (Dataset-Orchestration Layer)

## Overview
`abcd-skill` is the NeuroClaw orchestration skill for the **ABCD Study (Adolescent Brain Cognitive Development)** dataset.

It coordinates a fixed three-phase workflow:
1. Obtain approved ABCD data from the NBDC Data Sharing Platform.
2. Prepare and validate BIDS-style data organization for downstream processing.
3. Delegate modality pipelines to `smri-skill`, `fmri-skill`, and `dwi-skill`.

It also provides **phenotype extraction** and **QC integration** paths:
- Extract and merge ABCD phenotype tables (mental health, cognition, substance use, etc.).
- Generate per-subject QC summaries with exclusion lists.

This skill follows NeuroClaw hierarchy:
- Defines **WHAT to do**, not low-level implementation details.
- Does **not** execute direct shell commands itself.
- Delegates all execution via `claw-shell` to base/tool skills.

**Research use only.**

---

## Download Stage (Mandatory First Step)

### Source
Current ABCD data is distributed through the **NIH Brain Development Cohorts (NBDC) Data Sharing Platform**:
- Access instructions: https://docs.abcdstudy.org/latest/usage/access.html
…

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How to install

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Audit of the latest version

A  17 of 17 checks passed. Deterministic, no model, same answer every run.
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (14430 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No curl or wget piped into a shell
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

cuhk-aim-group/neurodiscovery · 91 stars · license MIT · pushed 2026-09-22 · branch main

API

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GET https://markdownregistry.com/api/v1/resolve?ref=cuhk-aim-group/neurodiscovery/abcd-skill
GET https://markdownregistry.com/api/v1/blob/23e53f25a0b7b27a4020a7e3eb5c9b47af669891aab07472eefb96c3fb60f6b2

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