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abide-skill SKILL.md skillA

abide-skill from cuhk-aim-group/neurodiscovery is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.

Install it, pinned

mdr add cuhk-aim-group/neurodiscovery/abide-skill@git:20261023.f74c2bd

Pins git:20261023.f74c2bd in mdr.lock. Pin the fingerprint instead.

Audit grade: A, 17 of 17 checks passed
Kind: SKILL.md skill
Repository: cuhk-aim-group/neurodiscovery
Path: skills/abide-skill/SKILL.md
Versions recorded: 2
Latest version: git:20261023.f74c2bd, committed Oct 23, 2026
First version recorded: May 5, 2026
Size: 12,391 bytes
Repository stars: 93
License: MIT

Use this skill whenever the user wants an end-to-end workflow for the ABIDE (Autism Brain Imaging Data Exchange) dataset, including download, BIDS organization, and processing of sMRI and rs-fMRI data. Triggers include: 'ABIDE', 'ABIDE data', 'process ABIDE', 'ABIDE fMRI', 'ABIDE sMRI', 'autism imaging', or any request to run the ABIDE pipeline. This is the NeuroRuntime dataset-orchestration layer for ABIDE.

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# ABIDE Skill (Dataset-Orchestration Layer)

## Overview
`abide-skill` is the NeuroRuntime orchestration skill for the **ABIDE (Autism Brain Imaging Data Exchange)** dataset.

It coordinates a fixed three-phase workflow:
1. Download ABIDE data from the FCP/INDI repository or NITRC.
2. Prepare and validate BIDS-style data organization for downstream processing.
3. Delegate modality pipelines to `smri-skill` and `fmri-skill`.

It also provides **phenotype extraction** and **QC integration** paths:
- Extract and merge ABIDE phenotype tables (diagnosis, age, sex, site, FIQ, ADOS, etc.).
- Generate per-subject QC summaries with exclusion lists.

This skill follows NeuroRuntime hierarchy:
- Defines **WHAT to do**, not low-level implementation details.
- Does **not** execute direct shell commands itself.
- Delegates all execution via `claw-shell` to base/tool skills.

**Research use only.**

---

## Download Stage (Mandatory First Step)

### Source
ABIDE data is distributed through the **FCP/INDI** repository:
- ABIDE I: https://fcon_1000.projects.nitrc.org/indi/abide/
- ABIDE II: https://fcon_1000.projects.nitrc.org/indi/abide_II.html
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint

mdr add cuhk-aim-group/neurodiscovery/abide-skill@sha256:6c6dfeab43018393

The line at the top of this page pins the label git:20261023.f74c2bd, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

[![mdr](https://markdownregistry.com/badge/art_fmqnp66luefq2i3j.svg)](https://markdownregistry.com/a/art_fmqnp66luefq2i3j)

4 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 2 versions of this file, between May 5, 2026 and Oct 23, 2026, about one every 170 days.

version	committed	commit	size	audit
git:20261023.f74c2bd latest	2026-10-23	f74c2bd	12,391 B	A	view · diff
git:20260505.e9ddd22	2026-05-05	e9ddd22	12,382 B	A	view

Audit of the latest version

A 17 of 17 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.

pass: Frontmatter block present
pass: Frontmatter declares a name
pass: Frontmatter declares a description
pass: Size between 200 bytes and 200 KB (12391 bytes)
pass: No zero-width or bidi control characters
pass: No instruction hidden inside an HTML comment
pass: No link to an exfiltration or paste host
pass: No credential-shaped string
pass: No instruction to send local credentials anywhere
pass: No text hidden with inline styles
pass: No prompt-injection phrasing
pass: No curl or wget piped into a shell
pass: No recursive delete of root, home or parent
pass: No instruction to read or print local credentials
pass: No base64 blob over 200 characters
pass: No link to a raw IP address
pass: No script tag

Source

GitHub

cuhk-aim-group/neurodiscovery · 93 stars · license MIT · pushed 2026-10-23 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_fmqnp66luefq2i3j
GET https://markdownregistry.com/api/v1/resolve?ref=cuhk-aim-group/neurodiscovery/abide-skill
GET https://markdownregistry.com/api/v1/blob/6c6dfeab430183933dd50a95c7df8ac63a50aaea53f1ddce281eb108b2983347

Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.