cuhk-aim-group/neurodiscovery
50 agent markdown files indexed from cuhk-aim-group/neurodiscovery. Install any of them pinned to an exact hash with mdr add cuhk-aim-group/neurodiscovery/<name>.
abcd-skill skill
cuhk-aim-group/neurodiscovery · skills/abcd-skill/SKILL.md · Use this skill whenever the user wants an end-to-end workflow for the ABCD Study dataset, including controlled access…
git:20260825.f7533a2 · audit A · 91 stars
abide-skill skill
cuhk-aim-group/neurodiscovery · skills/abide-skill/SKILL.md · Use this skill whenever the user wants an end-to-end workflow for the ABIDE (Autism Brain Imaging Data Exchange)…
git:20260505.e9ddd22 · audit A · 91 stars
academic-research-hub skill
cuhk-aim-group/neurodiscovery · skills/academic-research-hub/SKILL.md · Use this skill when users need to search academic papers, download research documents, extract citations, or gather…
git:20260506.86420c0 · audit A · 91 stars
adhd200-skill skill
cuhk-aim-group/neurodiscovery · skills/adhd200-skill/SKILL.md · Use this skill whenever the user wants an end-to-end workflow for the ADHD-200 dataset, including download, BIDS…
git:20260505.e9ddd22 · audit A · 91 stars
adni-skill skill
cuhk-aim-group/neurodiscovery · skills/adni-skill/SKILL.md · Use this skill whenever the user wants an end-to-end workflow for ADNI or ADNI-DOD data, including controlled LONI IDA…
git:20260825.f7533a2 · audit A · 91 stars
aibl-skill skill
cuhk-aim-group/neurodiscovery · skills/aibl-skill/SKILL.md · Use this skill whenever the user wants an end-to-end workflow for the AIBL (Australian Imaging, Biomarkers and…
git:20260506.f8d0216 · audit A · 91 stars
aomic-skill skill
cuhk-aim-group/neurodiscovery · skills/aomic-skill/SKILL.md · Use this skill whenever the user wants an end-to-end workflow for the AOMIC (Amsterdam Open MRI Collection) dataset…
git:20260506.f8d0216 · audit A · 91 stars
asl-skill skill
cuhk-aim-group/neurodiscovery · skills/asl-skill/SKILL.md · Use this skill whenever the user wants to process Arterial Spin Labeling (ASL) perfusion MRI data including CBF…
git:20260506.f8d0216 · audit A · 91 stars
beautiful-log skill
cuhk-aim-group/neurodiscovery · skills/beautiful-log/SKILL.md · Use this skill after a conversation or task is completed when the user wants a clean, beautiful HTML chat log. It keeps…
git:20260506.86420c0 · audit A · 91 stars
bids-organizer skill
cuhk-aim-group/neurodiscovery · skills/bids-organizer/SKILL.md · Use this skill whenever the user wants to automatically organize raw neuroimaging data (DICOM, NIfTI, EEG, etc.) into a…
git:20260506.86420c0 · audit A · 91 stars
bnt skill
cuhk-aim-group/neurodiscovery · skills/bnt/SKILL.md · Use this model doc whenever the user wants to run BrainNetworkTransformer for fMRI phenotype prediction, including data…
git:20260515.bfd8dae · audit A · 91 stars
bold5000-skill skill
cuhk-aim-group/neurodiscovery · skills/bold5000-skill/SKILL.md · Use this skill whenever the user wants an end-to-end workflow for the BOLD5000 dataset, including download, BIDS…
git:20260505.e9ddd22 · audit A · 91 stars
brain-age-modeling skill
cuhk-aim-group/neurodiscovery · skills/brain-age-modeling/SKILL.md · Use this skill whenever the user wants brain-age prediction, predicted-age bias correction, Brain-PAD/brain-age gap…
git:20260825.cbd02ff · audit A · 91 stars
brain-visualization skill
cuhk-aim-group/neurodiscovery · skills/brain-visualization/SKILL.md · Use this skill whenever the user wants to visualize neuroimaging analysis results, including 3D brain connectivity…
git:20260506.86420c0 · audit A · 91 stars
braingnn skill
cuhk-aim-group/neurodiscovery · skills/brain_gnn/SKILL.md · Use this model doc whenever the user wants to run BrainGNN for fMRI phenotype prediction, including graph construction…
git:20260515.bfd8dae · audit A · 91 stars
brainnetcnn skill
cuhk-aim-group/neurodiscovery · skills/brainnetcnn/SKILL.md · Use this model skill whenever the user wants to train, evaluate, or apply BrainNetCNN to dense ROI-by-ROI structural or…
git:20260825.cbd02ff · audit A · 91 stars
camcan-skill skill
cuhk-aim-group/neurodiscovery · skills/camcan-skill/SKILL.md · Use this skill whenever the user wants an end-to-end workflow for the Cam-CAN (Cambridge Centre for Ageing and…
git:20260506.86420c0 · audit A · 91 stars
causal-treatment-models skill
cuhk-aim-group/neurodiscovery · skills/causal-treatment-models/SKILL.md · Use this skill whenever the scientific target is a treatment effect rather than ordinary outcome prediction: propensity…
git:20260825.cbd02ff · audit A · 91 stars
claw-shell skill
cuhk-aim-group/neurodiscovery · skills/claw-shell/SKILL.md · Use this skill whenever any NeuroClaw skill, sub-agent, or model needs to execute shell commands safely (e.g. source…
git:20260506.86420c0 · audit A · 91 stars
cnn3d skill
cuhk-aim-group/neurodiscovery · skills/cnn3d/SKILL.md · Use this model skill whenever the user wants a compact residual 3D convolutional neural network for voxel-level…
git:20260825.cbd02ff · audit A · 91 stars
cobre-skill skill
cuhk-aim-group/neurodiscovery · skills/cobre-skill/SKILL.md · Use this skill whenever the user wants an end-to-end workflow for the COBRE dataset, including download, BIDS…
git:20260505.e9ddd22 · audit A · 91 stars
combraintf skill
cuhk-aim-group/neurodiscovery · skills/combraintf/SKILL.md · Use this model doc whenever the user wants to run Com-BrainTF (Community-aware Brain Transformer) for fMRI phenotype…
git:20260519.c62dcfb · audit A · 91 stars
conda-env-manager skill
cuhk-aim-group/neurodiscovery · skills/conda-env-manager/SKILL.md · Use this skill whenever the user wants to create, activate, list, export, update, clone, remove, or otherwise manage…
git:20260506.86420c0 · audit A · 91 stars
conn-tool skill
cuhk-aim-group/neurodiscovery · skills/conn-tool/SKILL.md · Use this skill whenever the user wants to perform advanced functional connectivity (ROI-to-ROI, seed-to-voxel, ICA) or…
git:20260506.86420c0 · audit A · 91 stars
connectome-discovery skill
cuhk-aim-group/neurodiscovery · skills/connectome-discovery/SKILL.md · Use this workflow skill whenever the user wants to turn connectome-model outputs into network discoveries: compare…
git:20260825.cbd02ff · audit A · 91 stars
cpm skill
cuhk-aim-group/neurodiscovery · skills/cpm/SKILL.md · Use this model skill whenever the user wants Connectome Predictive Modeling with fold-local functional-connectivity…
git:20260825.cbd02ff · audit A · 91 stars
ctp-skill skill
cuhk-aim-group/neurodiscovery · skills/ctp-skill/SKILL.md · Process 4D CT perfusion (CTP) time series and supplied Tmax, CBF, CBV and MTT maps, including rigid motion correction…
git:20260914.cfc1dd5 · audit A · 91 stars
dcm2nii skill
cuhk-aim-group/neurodiscovery · skills/dcm2nii/SKILL.md · Use this skill whenever the user wants to convert DICOM files or folders to NIfTI format (.nii or .nii.gz), extract…
git:20260506.86420c0 · audit A · 91 stars
dependency-planner skill
cuhk-aim-group/neurodiscovery · skills/dependency-planner/SKILL.md · Use this skill whenever a NeuroClaw skill, model, or sub-agent reports a missing dependency (e.g. ImportError…
git:20260506.86420c0 · audit A · 91 stars
detrending skill
cuhk-aim-group/neurodiscovery · skills/detrending/SKILL.md · Use this model doc whenever the user wants to perform neuroimaging signal denoising with classical detrending methods…
git:20260505.e9ddd22 · audit A · 91 stars
dictlearning skill
cuhk-aim-group/neurodiscovery · skills/dictlearning/SKILL.md · Use this model doc whenever the user wants to perform resting-state network decomposition using DictLearning. This is a…
git:20260505.e9ddd22 · audit A · 91 stars
dipy-tool skill
cuhk-aim-group/neurodiscovery · skills/dipy-tool/SKILL.md · Use this skill whenever any NeuroClaw diffusion MRI / DWI modality skill needs to execute concrete DIPY operations…
git:20260506.86420c0 · audit A · 91 stars
dmt-har-med-skill skill
cuhk-aim-group/neurodiscovery · skills/dmt-har-med-skill/SKILL.md · Use this skill whenever the user wants an end-to-end workflow for the DMT-HAR-MED dataset (ds006644), including…
git:20260505.e9ddd22 · audit A · 91 stars
docker-env-manager skill
cuhk-aim-group/neurodiscovery · skills/docker-env-manager/SKILL.md · Use this skill whenever the user wants to pull, run, build, compose, list, prune, manage, or otherwise handle Docker…
git:20260506.86420c0 · audit A · 91 stars
dwi-skill skill
cuhk-aim-group/neurodiscovery · skills/dwi-skill/SKILL.md · Use this skill whenever the user wants to preprocess diffusion MRI / DWI data, compute diffusion metrics (FA/MD/AD/RD…
git:20260506.86420c0 · audit B · 91 stars
eeg-skill skill
cuhk-aim-group/neurodiscovery · skills/eeg-skill/SKILL.md · Use this skill whenever the user wants to load, preprocess, epoch, filter, or extract features from EEG data…
git:20260506.86420c0 · audit A · 91 stars
experiment-controller skill
cuhk-aim-group/neurodiscovery · skills/experiment-controller/SKILL.md · Use this skill whenever the user wants to execute experiments based on a finalized method and record results. Triggers…
git:20260506.86420c0 · audit A · 91 stars
filtering skill
cuhk-aim-group/neurodiscovery · skills/filtering/SKILL.md · Use this model doc whenever the user wants to perform neuroimaging signal denoising with classical temporal filtering…
git:20260505.e9ddd22 · audit A · 91 stars
fm_app skill
cuhk-aim-group/neurodiscovery · skills/fm_app/SKILL.md · Use this model doc whenever the user wants to run FM-APP for phenotype prediction using fMRI ROI features and optional…
git:20260506.f8d0216 · audit A · 91 stars
fmri-skill skill
cuhk-aim-group/neurodiscovery · skills/fmri-skill/SKILL.md · Use this skill whenever the user wants to perform fMRI preprocessing, first-level analysis, ROI extraction, functional…
git:20260506.86420c0 · audit A · 91 stars
fmriprep-tool skill
cuhk-aim-group/neurodiscovery · skills/fmriprep-tool/SKILL.md · Use this skill whenever the user wants to perform standardized preprocessing of functional MRI (fMRI) and anatomical…
git:20260505.e9ddd22 · audit A · 91 stars
freesurfer-tool skill
cuhk-aim-group/neurodiscovery · skills/freesurfer-tool/SKILL.md · Use this skill whenever the user wants to process structural MRI data (T1w, T2w, FLAIR, etc.) with FreeSurfer…
git:20260506.86420c0 · audit A · 91 stars
fsl-tool skill
cuhk-aim-group/neurodiscovery · skills/fsl-tool/SKILL.md · Use this skill whenever the user wants to process neuroimaging data with FSL (FMRIB Software Library), covering…
git:20260505.e9ddd22 · audit A · 91 stars
git-essentials skill
cuhk-aim-group/neurodiscovery · skills/git-essentials/SKILL.md · Essential Git commands and workflows for version control, branching, and collaboration.
git:20260506.86420c0 · audit A · 91 stars
git-workflows skill
cuhk-aim-group/neurodiscovery · skills/git-workflows/SKILL.md · Advanced git operations beyond add/commit/push. Use when rebasing, bisecting bugs, using worktrees for parallel…
git:20260506.86420c0 · audit A · 91 stars
glm skill
cuhk-aim-group/neurodiscovery · skills/glm/SKILL.md · Use this model doc whenever the user wants to run a classical General Linear Model (GLM) for task-evoked fMRI…
git:20260825.cbd02ff · audit A · 91 stars
harmonization-tool skill
cuhk-aim-group/neurodiscovery · skills/harmonization-tool/SKILL.md · Use this skill whenever the user wants to remove site/scanner/batch effects from neuroimaging features before running…
git:20260523.efa9db2 · audit A · 91 stars
harness-core skill
cuhk-aim-group/neurodiscovery · skills/harness-core/SKILL.md · Core harness library providing standardized self-verification, checkpoint management, drift detection, and audit…
git:20260506.86420c0 · audit A · 91 stars
hbn-skill skill
cuhk-aim-group/neurodiscovery · skills/hbn-skill/SKILL.md · Use this skill whenever the user wants an end-to-end workflow for the Healthy Brain Network (HBN) dataset, including…
git:20260506.f8d0216 · audit A · 91 stars
hcpa-skill skill
cuhk-aim-group/neurodiscovery · skills/hcpa-skill/SKILL.md · Use this skill whenever the user wants an end-to-end workflow for the HCP Aging (HCP-A) dataset, including dataset…
git:20260825.f7533a2 · audit A · 91 stars
Source
github.com/cuhk-aim-group/neurodiscovery · 91 stars · license MIT · pushed 2026-09-22